Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QRA13_RS10345 Genome accession   NZ_CP128184
Coordinates   2149463..2150611 (-) Length   382 a.a.
NCBI ID   WP_029326229.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ0-1 isolate soil     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2144463..2155611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA13_RS10315 (QRA13_10315) - 2144595..2145353 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  QRA13_RS10320 (QRA13_10320) - 2145347..2146294 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  QRA13_RS10325 (QRA13_10325) ceuB 2146284..2147237 (-) 954 WP_032872883.1 ABC transporter permease Machinery gene
  QRA13_RS10330 (QRA13_10330) - 2147651..2149015 (+) 1365 WP_007609394.1 aspartate kinase -
  QRA13_RS10335 (QRA13_10335) - 2149110..2149211 (+) 102 WP_239033885.1 YjcZ family sporulation protein -
  QRA13_RS10340 (QRA13_10340) phrC 2149360..2149479 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QRA13_RS10345 (QRA13_10345) rapC 2149463..2150611 (-) 1149 WP_029326229.1 Rap family tetratricopeptide repeat protein Regulator
  QRA13_RS10350 (QRA13_10350) - 2150770..2152197 (-) 1428 WP_224224030.1 HAMP domain-containing sensor histidine kinase -
  QRA13_RS10355 (QRA13_10355) - 2152184..2152867 (-) 684 WP_007609386.1 response regulator transcription factor -
  QRA13_RS10360 (QRA13_10360) - 2153080..2154510 (+) 1431 WP_224224029.1 ABC transporter permease -
  QRA13_RS10365 (QRA13_10365) - 2154525..2155208 (+) 684 WP_045206762.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45406.59 Da        Isoelectric Point: 4.9221

>NTDB_id=846502 QRA13_RS10345 WP_029326229.1 2149463..2150611(-) (rapC) [Bacillus velezensis strain YJ0-1 isolate soil]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFSYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=846502 QRA13_RS10345 WP_029326229.1 2149463..2150611(-) (rapC) [Bacillus velezensis strain YJ0-1 isolate soil]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGAGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCAGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568