Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QRD90_RS17340 Genome accession   NZ_CP128118
Coordinates   3613623..3614699 (-) Length   358 a.a.
NCBI ID   WP_252298191.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain LN4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608623..3619699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS17300 (QRD90_17295) - 3609490..3610287 (+) 798 WP_054400219.1 YqhG family protein -
  QRD90_RS17305 (QRD90_17300) - 3610333..3610518 (-) 186 WP_252296066.1 YqzE family protein -
  QRD90_RS17310 (QRD90_17305) comGG 3610634..3610990 (-) 357 WP_162604400.1 competence type IV pilus minor pilin ComGG -
  QRD90_RS17315 (QRD90_17310) comGF 3611013..3611492 (-) 480 WP_084786101.1 competence type IV pilus minor pilin ComGF -
  QRD90_RS17320 (QRD90_17315) - 3611440..3611778 (-) 339 WP_127778476.1 hypothetical protein -
  QRD90_RS17325 (QRD90_17320) comGD 3611765..3612208 (-) 444 WP_054400215.1 competence type IV pilus minor pilin ComGD -
  QRD90_RS17330 (QRD90_17325) comGC 3612216..3612527 (-) 312 WP_286128720.1 competence type IV pilus major pilin ComGC -
  QRD90_RS17335 (QRD90_17330) comGB 3612605..3613639 (-) 1035 WP_252296067.1 competence type IV pilus assembly protein ComGB -
  QRD90_RS17340 (QRD90_17335) comGA 3613623..3614699 (-) 1077 WP_252298191.1 competence type IV pilus ATPase ComGA Machinery gene
  QRD90_RS17345 (QRD90_17340) - 3614803..3615183 (-) 381 WP_252277965.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QRD90_RS17350 (QRD90_17345) - 3615399..3616100 (+) 702 WP_053535698.1 helix-turn-helix domain-containing protein -
  QRD90_RS17355 (QRD90_17350) - 3616186..3616428 (+) 243 WP_034308393.1 DUF2626 domain-containing protein -
  QRD90_RS17360 (QRD90_17355) - 3616481..3617581 (-) 1101 WP_252296068.1 SAM-dependent methyltransferase -
  QRD90_RS17365 (QRD90_17360) - 3617895..3618521 (-) 627 WP_252296069.1 MBL fold metallo-hydrolase -
  QRD90_RS17370 (QRD90_17365) - 3618754..3618927 (+) 174 WP_034308396.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39755.45 Da        Isoelectric Point: 9.2525

>NTDB_id=846097 QRD90_RS17340 WP_252298191.1 3613623..3614699(-) (comGA) [Peribacillus frigoritolerans strain LN4]
MISIEKTAEKILTRAIVESASDIHIFFRGGGPHIQFRIDNKLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSGAIT
INLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSLLHH
AHEMINRNIITLEDPIENVSKKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILTTMH
TRDAQGAISRLLEFGVSLLEVEQTLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMGDEK
GKATVSYRQLKDEIGKAVAMGYVESQEYERLVYHETKK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=846097 QRD90_RS17340 WP_252298191.1 3613623..3614699(-) (comGA) [Peribacillus frigoritolerans strain LN4]
TTGATATCGATTGAAAAGACCGCAGAAAAAATACTAACCCGTGCCATCGTGGAATCGGCATCGGATATCCACATTTTTTT
TCGCGGAGGGGGGCCTCACATCCAATTCAGGATAGACAATAAGCTTGTTCCCCAGGAAACATTGTCATTCTTTGAAGCTG
AAAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGTGCCATCACC
ATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGTCATCCGCTT
AATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTGCACTCCTGA
AGCATTCCCATGGCATGCTCATATTTACCGGCCCGACCGGTAGTGGGAAAACCACGACACTATATTCCCTGCTTCACCAC
GCCCATGAGATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCAAAAAGGTATTGCAAGTCCA
AATCAATGAAAAGGCGGGCATTACGTATTCAGTCGGCCTAAAAGCTGTTCTGAGGCATGACCCGGACGTGATCATGGTTG
GGGAAGTCAGGGATGCAGAAACTGCCAAAATCGCGGTCCGTGCCGCATTAACCGGTCATCTGATACTAACGACCATGCAT
ACGAGGGACGCCCAAGGCGCCATCTCCAGATTACTGGAATTTGGTGTCAGCTTACTTGAGGTTGAACAGACTTTGATTGG
CGTGACAGCGCAGCGGCTGGTTGAATTGCGATGTCTTCCGTGTAAAGGGGACTGTGCTTTAGCTTGCAAAATGACTGCAA
GGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGTCTGGCTGAAGTTCTCCGGATAATGGGAGATGAAAAA
GGAAAGGCAACGGTCAGCTACCGCCAATTAAAGGATGAAATCGGAAAAGCTGTTGCGATGGGCTATGTGGAATCTCAGGA
ATATGAACGGCTGGTATACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.742

99.721

0.556
  pilB Haemophilus influenzae 86-028NP

38.218

97.207

0.372
  pilB Haemophilus influenzae Rd KW20

37.069

97.207

0.36