Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QRD90_RS17120 Genome accession   NZ_CP128118
Coordinates   3573117..3574832 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain LN4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3568117..3579832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD90_RS17100 (QRD90_17095) - 3569116..3569352 (+) 237 WP_034308264.1 DUF2627 domain-containing protein -
  QRD90_RS17105 (QRD90_17100) - 3569391..3570125 (-) 735 WP_053535671.1 glycerophosphodiester phosphodiesterase -
  QRD90_RS17110 (QRD90_17105) spo0A 3570542..3571333 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  QRD90_RS17115 (QRD90_17110) spoIVB 3571663..3572955 (-) 1293 WP_053535672.1 SpoIVB peptidase -
  QRD90_RS17120 (QRD90_17115) recN 3573117..3574832 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  QRD90_RS17125 (QRD90_17120) argR 3574855..3575304 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  QRD90_RS17130 (QRD90_17125) - 3575622..3576449 (-) 828 WP_034308281.1 TlyA family RNA methyltransferase -
  QRD90_RS17135 (QRD90_17130) dxs 3576454..3578346 (-) 1893 WP_252296062.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QRD90_RS17140 (QRD90_17135) - 3578596..3579489 (-) 894 WP_053535673.1 polyprenyl synthetase family protein -
  QRD90_RS17145 (QRD90_17140) - 3579491..3579724 (-) 234 WP_252296063.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=846096 QRD90_RS17120 WP_048681817.1 3573117..3574832(-) (recN) [Peribacillus frigoritolerans strain LN4]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=846096 QRD90_RS17120 WP_048681817.1 3573117..3574832(-) (recN) [Peribacillus frigoritolerans strain LN4]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAAAGCGGTAAAAGCGTATG
CAGGGTAAATGGAAAACTGGTAACGATTTCCACTTTGCGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTCCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACGGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATCGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATTTATATATGGAAAAAACAATTTTCGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGGATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGCATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAAATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613