Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   QRD88_RS05220 Genome accession   NZ_CP128114
Coordinates   1030175..1031125 (+) Length   316 a.a.
NCBI ID   WP_056766093.1    Uniprot ID   -
Organism   Bacillus safensis strain G6S3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1025175..1036125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS05190 (QRD88_05185) - 1026639..1027499 (+) 861 WP_197202935.1 SDR family oxidoreductase -
  QRD88_RS05195 (QRD88_05190) - 1027556..1027792 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QRD88_RS05200 (QRD88_05195) comK 1028082..1028660 (+) 579 WP_286099016.1 competence protein ComK Regulator
  QRD88_RS05205 (QRD88_05200) - 1028960..1029442 (+) 483 WP_024425482.1 hypothetical protein -
  QRD88_RS05210 (QRD88_05205) - 1029474..1029626 (-) 153 Protein_963 PLP-dependent aminotransferase family protein -
  QRD88_RS05215 (QRD88_05210) - 1029735..1030013 (+) 279 WP_171464240.1 barstar family protein -
  QRD88_RS05220 (QRD88_05215) ceuB 1030175..1031125 (+) 951 WP_056766093.1 ABC transporter permease Machinery gene
  QRD88_RS05225 (QRD88_05220) - 1031118..1032068 (+) 951 WP_286099017.1 iron chelate uptake ABC transporter family permease subunit -
  QRD88_RS05230 (QRD88_05225) - 1032059..1032817 (+) 759 WP_024426539.1 ATP-binding cassette domain-containing protein -
  QRD88_RS05235 (QRD88_05230) - 1032839..1033783 (+) 945 WP_056766096.1 siderophore ABC transporter substrate-binding protein -
  QRD88_RS05240 (QRD88_05235) - 1033921..1034874 (+) 954 WP_024425490.1 LCP family protein -
  QRD88_RS05245 (QRD88_05240) - 1034947..1035309 (-) 363 WP_024425491.1 hypothetical protein -
  QRD88_RS05250 (QRD88_05245) - 1035467..1036084 (+) 618 WP_024425492.1 TVP38/TMEM64 family protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34930.33 Da        Isoelectric Point: 9.7476

>NTDB_id=845945 QRD88_RS05220 WP_056766093.1 1030175..1031125(+) (ceuB) [Bacillus safensis strain G6S3]
MKLYQLSLLFVCLACISLFVGVQDLSILQLFHLTDEQVHTLVSSRLPRLVSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILVAMLVFTHVNPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKGLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=845945 QRD88_RS05220 WP_056766093.1 1030175..1031125(+) (ceuB) [Bacillus safensis strain G6S3]
ATGAAATTGTATCAATTAAGTTTGTTATTTGTATGTTTGGCATGTATATCTCTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGCTGTTTCATTTAACAGATGAACAAGTGCACACGTTAGTTTCAAGCCGCCTCCCGCGTCTCGTGAGTATTGTGC
TTGCTGGTATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGTAGCAATGCTTGTTTTTACACATGTGAATCCGCTTATGAAAATGGG
GATTGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATTT
ATGTACCATTAGTCGGCTTAATGTTTGGGGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCGCATGGCTTCAAGGGGATTTTTCTCTTATTGTCCAAGGGCGTTATGAACTGCTCTATGTGAGCGTTCC
ACTATTGATCATTGCGTATTTATATGCTGACCGCTTTACAGTGGCAGGCATGGGTGAGAGCTTTGCCGTTAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATCGTTTCAATGATTACGTCTGTCACCATTTTAACTGTCGGAATG
CTGCCATTCCTTGGATTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAAGGCCTCCCGCATAC
AGCTTTACTAGGAGCTATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATATCAGTTG
GACTCATGGTAGGCATCATCGGAAGTGCGATCTTCCTGTATATGTTATTAAGGAGGAAACGCTATGCATAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.163

95.253

0.487