Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QRD87_RS15615 Genome accession   NZ_CP128109
Coordinates   2973262..2973903 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain D9_B_49     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2968262..2978903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD87_RS15580 (QRD87_15580) - 2969390..2969821 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  QRD87_RS15585 (QRD87_15585) - 2969821..2970162 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  QRD87_RS15590 (QRD87_15590) - 2970155..2971633 (+) 1479 WP_286108486.1 Na+/H+ antiporter subunit D -
  QRD87_RS15595 (QRD87_15595) - 2971640..2972119 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  QRD87_RS15600 (QRD87_15600) - 2972119..2972400 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  QRD87_RS15605 (QRD87_15605) mnhG 2972384..2972758 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  QRD87_RS15610 (QRD87_15610) - 2972849..2973238 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  QRD87_RS15615 (QRD87_15615) comA 2973262..2973903 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  QRD87_RS15620 (QRD87_15620) comP 2973984..2976296 (-) 2313 WP_058336868.1 ATP-binding protein Regulator
  QRD87_RS15625 (QRD87_15625) comX 2976350..2976520 (-) 171 WP_074041927.1 competence pheromone ComX -
  QRD87_RS15630 (QRD87_15630) - 2976517..2977431 (-) 915 WP_168948551.1 polyprenyl synthetase family protein -
  QRD87_RS15635 (QRD87_15635) degQ 2977583..2977723 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QRD87_RS15640 (QRD87_15640) - 2978229..2978582 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=845866 QRD87_RS15615 WP_007500477.1 2973262..2973903(-) (comA) [Bacillus altitudinis strain D9_B_49]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=845866 QRD87_RS15615 WP_007500477.1 2973262..2973903(-) (comA) [Bacillus altitudinis strain D9_B_49]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGACGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TGATTTCACAGCAACAAGAGAAGCCAGAACAGGCACAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAGAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718