Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QSG87_RS14615 Genome accession   NZ_CP127923
Coordinates   3002191..3002616 (-) Length   141 a.a.
NCBI ID   WP_317023475.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2997191..3007616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS14585 (QSG87_14585) - 2997272..2997541 (-) 270 WP_087551335.1 HPr family phosphocarrier protein -
  QSG87_RS14590 (QSG87_14590) rapZ 2997538..2998389 (-) 852 WP_087551336.1 RNase adapter RapZ -
  QSG87_RS14595 (QSG87_14595) panC 2998417..2999262 (-) 846 WP_087551337.1 pantoate--beta-alanine ligase -
  QSG87_RS14600 (QSG87_14600) panB 2999265..3000074 (-) 810 WP_087513054.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QSG87_RS14605 (QSG87_14605) folK 3000118..3000603 (-) 486 WP_087513055.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QSG87_RS14610 (QSG87_14610) pcnB 3000600..3002054 (-) 1455 WP_317023474.1 polynucleotide adenylyltransferase PcnB -
  QSG87_RS14615 (QSG87_14615) comEA 3002191..3002616 (-) 426 WP_317023475.1 ComEA family DNA-binding protein Machinery gene
  QSG87_RS14620 (QSG87_14620) mazG 3002619..3003386 (-) 768 WP_087551341.1 nucleoside triphosphate pyrophosphohydrolase -
  QSG87_RS14625 (QSG87_14625) - 3003489..3004262 (+) 774 WP_087551342.1 SDR family oxidoreductase -
  QSG87_RS14630 (QSG87_14630) der 3004371..3005783 (-) 1413 WP_317023476.1 ribosome biogenesis GTPase Der -
  QSG87_RS14635 (QSG87_14635) bamB 3005954..3007102 (-) 1149 WP_317023477.1 outer membrane protein assembly factor BamB -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15710.98 Da        Isoelectric Point: 10.2238

>NTDB_id=845251 QSG87_RS14615 WP_317023475.1 3002191..3002616(-) (comEA) [Acinetobacter chinensis strain SAAc573]
MTIKAHTFYQFICIFLSAVLWSFQGVHAQQFDQQYLKWKAEQEAQDQKLKGNTADYYLSRPTVTPAGSSKKTAAAATGNK
VSLNSATLEQLQQLTGVGQKKAQAIIDYRQKNGKFKSVEELDQVKGIGPALMEKNRARLAL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=845251 QSG87_RS14615 WP_317023475.1 3002191..3002616(-) (comEA) [Acinetobacter chinensis strain SAAc573]
ATGACAATCAAAGCCCATACATTTTATCAGTTTATCTGTATTTTTCTGTCCGCTGTACTGTGGAGTTTTCAGGGGGTACA
TGCTCAGCAGTTTGATCAGCAGTATCTGAAATGGAAAGCTGAACAGGAAGCACAGGATCAGAAATTAAAAGGCAATACCG
CAGACTATTATCTGTCCAGACCCACAGTTACACCTGCCGGAAGTTCAAAAAAAACGGCTGCAGCAGCGACAGGAAATAAA
GTCAGTCTGAACAGTGCCACACTGGAACAGCTTCAGCAGCTTACAGGTGTCGGGCAGAAAAAAGCTCAGGCAATCATTGA
TTACCGACAGAAAAATGGAAAATTTAAATCGGTGGAAGAACTCGATCAGGTCAAGGGAATTGGTCCTGCGCTGATGGAGA
AAAACAGAGCCAGACTGGCTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(78-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

48.936

100

0.489
  comEA Acinetobacter baumannii strain A118

43.796

97.163

0.426
  comEA Acinetobacter baumannii D1279779

44.275

92.908

0.411