Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   QSG87_RS00865 Genome accession   NZ_CP127923
Coordinates   150375..151520 (-) Length   381 a.a.
NCBI ID   WP_317023829.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain SAAc573     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 145375..156520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS00840 (QSG87_00840) - 145478..146239 (-) 762 WP_317023824.1 AraC family transcriptional regulator -
  QSG87_RS00845 (QSG87_00845) - 146254..147483 (-) 1230 WP_317023825.1 MFS transporter -
  QSG87_RS00850 (QSG87_00850) - 147614..148261 (+) 648 WP_317023826.1 TetR/AcrR family transcriptional regulator -
  QSG87_RS00855 (QSG87_00855) - 148378..149262 (+) 885 WP_317023827.1 DMT family transporter -
  QSG87_RS00860 (QSG87_00860) - 149778..150347 (-) 570 WP_317023828.1 Sua5/YciO/YrdC/YwlC family protein -
  QSG87_RS00865 (QSG87_00865) dprA 150375..151520 (-) 1146 WP_317023829.1 DNA-processing protein DprA Machinery gene
  QSG87_RS00870 (QSG87_00870) tsaP 151540..152694 (-) 1155 WP_317023830.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QSG87_RS00875 (QSG87_00875) def 152815..153345 (+) 531 WP_087514173.1 peptide deformylase -
  QSG87_RS00880 (QSG87_00880) - 153436..153894 (+) 459 WP_317023831.1 DUF2946 family protein -
  QSG87_RS00885 (QSG87_00885) - 153966..156041 (+) 2076 WP_317023832.1 TonB-dependent copper receptor -
  QSG87_RS00890 (QSG87_00890) - 156071..156325 (+) 255 WP_317023833.1 DUF4199 domain-containing protein -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 42354.25 Da        Isoelectric Point: 6.7466

>NTDB_id=845227 QSG87_RS00865 WP_317023829.1 150375..151520(-) (dprA) [Acinetobacter chinensis strain SAAc573]
MLNPLSQAQIETITLWYLVQHSLSAFYKLKQHFGSAHLATTPKGLAQWSQLNLHKNHIQRVQEFQTDAGQQKFAELLQSI
QSHTDFVLIPESTDYPAQLLPYTSPPPILFGQGNAQALLQPQIAIVGSRKPSPHGRQIAYDFAFYLSEKGFYINSGLAQG
IDEAAHKGGLKHQRTIAVMGTGLDQTYPTAHTQLRQQITEQRGAVITEFLPGTLPLQQHFPRRNRIVSGLSLGVIVAEAS
LNSGSLITAQLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQVIEDLALPTQWMAQQQKETYTVSETPVLPE
HLIALYQTLDWNGLNMDQLANKLSMDISTLTGQLMELELQGMCIQQSGLYLRCRQGHLGSQ

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=845227 QSG87_RS00865 WP_317023829.1 150375..151520(-) (dprA) [Acinetobacter chinensis strain SAAc573]
ATGCTGAACCCTTTATCACAAGCGCAGATTGAAACAATTACCTTGTGGTATCTGGTTCAGCATTCTCTTTCTGCTTTTTA
TAAACTGAAACAGCATTTTGGCAGTGCCCACCTGGCGACCACCCCCAAGGGTCTTGCGCAGTGGTCCCAGCTGAATCTGC
ATAAAAATCACATACAGCGCGTACAGGAATTTCAGACTGACGCTGGACAACAGAAATTTGCAGAACTGCTACAAAGCATT
CAATCTCATACTGATTTTGTTCTGATCCCTGAATCCACCGACTATCCTGCTCAACTTCTTCCTTATACCAGCCCTCCGCC
CATTCTGTTCGGACAGGGAAATGCTCAGGCCTTGCTGCAACCTCAGATTGCAATCGTCGGCAGTCGCAAACCCAGTCCTC
ATGGACGTCAGATTGCCTATGATTTTGCCTTTTATCTGAGCGAAAAGGGTTTTTATATCAACAGTGGACTGGCTCAGGGT
ATTGATGAAGCTGCCCATAAAGGCGGGTTGAAGCACCAGCGAACCATTGCAGTCATGGGAACAGGACTGGATCAGACTTA
TCCGACAGCCCATACCCAGCTCAGACAGCAGATTACTGAACAGCGTGGTGCGGTCATCACAGAATTTTTGCCTGGCACAC
TTCCTCTTCAGCAGCATTTTCCACGGCGTAACCGCATTGTCAGTGGACTAAGCCTGGGCGTCATCGTGGCAGAAGCCAGT
CTGAACAGTGGCTCACTGATCACAGCTCAACTTGCCGCTGAACAGGGCAAAACCGTATTTGCCATACCTGGACATATTTA
CAGCGAATTTCATCAGGGATGTCATCAGCTGATCCGTGAAGGTGCAATCCTGATTGACCATCCTGAACAGGTGATTGAGG
ACCTGGCACTACCTACCCAGTGGATGGCGCAGCAACAGAAAGAGACCTATACGGTTTCAGAAACACCTGTCCTGCCTGAG
CATCTGATTGCTTTATACCAGACCCTGGACTGGAACGGACTGAACATGGATCAGCTGGCAAACAAACTCAGTATGGATAT
TTCAACACTGACTGGTCAGCTGATGGAACTGGAGCTTCAGGGGATGTGCATTCAACAGAGTGGATTATATCTGCGTTGTC
GTCAGGGTCATTTAGGTTCACAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

69.6

98.425

0.685

  dprA Acinetobacter baumannii D1279779

69.067

98.425

0.68

  dprA Acinetobacter baylyi ADP1

61.579

99.738

0.614