Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QSG85_RS14850 Genome accession   NZ_CP127906
Coordinates   3185221..3185631 (-) Length   136 a.a.
NCBI ID   WP_057092817.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SAAb472     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3180221..3190631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS14820 (QSG85_14825) - 3180307..3180576 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  QSG85_RS14825 (QSG85_14830) rapZ 3180573..3181424 (-) 852 WP_000821671.1 RNase adapter RapZ -
  QSG85_RS14830 (QSG85_14835) panC 3181447..3182295 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  QSG85_RS14835 (QSG85_14840) panB 3182299..3183108 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QSG85_RS14840 (QSG85_14845) folK 3183154..3183636 (-) 483 WP_317002333.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QSG85_RS14845 (QSG85_14850) pcnB 3183633..3185096 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  QSG85_RS14850 (QSG85_14855) comEA 3185221..3185631 (-) 411 WP_057092817.1 ComEA family DNA-binding protein Machinery gene
  QSG85_RS14855 (QSG85_14860) mazG 3185600..3186406 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  QSG85_RS14860 (QSG85_14865) - 3186518..3187291 (+) 774 WP_114253221.1 SDR family oxidoreductase -
  QSG85_RS14865 (QSG85_14870) - 3187336..3189642 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15656.94 Da        Isoelectric Point: 10.3495

>NTDB_id=845177 QSG85_RS14850 WP_057092817.1 3185221..3185631(-) (comEA) [Acinetobacter baumannii strain SAAb472]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=845177 QSG85_RS14850 WP_057092817.1 3185221..3185631(-) (comEA) [Acinetobacter baumannii strain SAAb472]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

99.265

100

0.993
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

44.275

96.324

0.426