Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QSG84_RS09495 Genome accession   NZ_CP127893
Coordinates   2029601..2030461 (+) Length   286 a.a.
NCBI ID   WP_317030172.1    Uniprot ID   A0AA97F2L7
Organism   Acinetobacter sp. SAAs470     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2024601..2035461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS09475 (QSG84_09470) secG 2025237..2025566 (-) 330 WP_317030169.1 preprotein translocase subunit SecG -
  QSG84_RS09480 (QSG84_09475) tpiA 2025580..2026371 (-) 792 WP_317030170.1 triose-phosphate isomerase -
  QSG84_RS09485 (QSG84_09480) pilB 2026638..2028344 (+) 1707 WP_317032654.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSG84_RS09490 (QSG84_09485) pilC 2028375..2029601 (+) 1227 WP_317030171.1 type II secretion system F family protein Machinery gene
  QSG84_RS09495 (QSG84_09490) pilD 2029601..2030461 (+) 861 WP_317030172.1 A24 family peptidase Machinery gene
  QSG84_RS09500 (QSG84_09495) coaE 2030470..2031111 (+) 642 WP_317030173.1 dephospho-CoA kinase -
  QSG84_RS09505 (QSG84_09500) - 2031115..2032032 (-) 918 WP_317030174.1 DMT family transporter -
  QSG84_RS09510 (QSG84_09505) rlmB 2032070..2032822 (-) 753 WP_317030175.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QSG84_RS09515 (QSG84_09510) - 2033016..2033339 (-) 324 WP_317030176.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32020.65 Da        Isoelectric Point: 7.9404

>NTDB_id=845129 QSG84_RS09495 WP_317030172.1 2029601..2030461(+) (pilD) [Acinetobacter sp. SAAs470]
MYVFFSYFATHPVALYLAVGLFSLCIGSFLNVVIYRIPKIMQQEWQQECHLLLHPEQVIIDPAKLSLSTPPSSCPHCQTT
IRWYQNIPLISWLILGGKCAHCQTPINIRYPFIELLTTLCGLVIVMVFGPSIKMLCALLLSYVLIALTFIDFDHQLLPDR
LTLTLAAAGLAINSFTIFTTATLAIWGYIIGFLCLWIVYYLFKLCTGKEGMGYGDFKLLAALGAWLGPFMLPLIILLSSC
MGAIIGLILIKVRQQNLPFAFGPYIAIAGWIALLWGESIMRIYLTP

Nucleotide


Download         Length: 861 bp        

>NTDB_id=845129 QSG84_RS09495 WP_317030172.1 2029601..2030461(+) (pilD) [Acinetobacter sp. SAAs470]
ATGTACGTGTTTTTTTCTTATTTTGCGACTCATCCTGTTGCACTCTATCTTGCTGTTGGATTGTTCAGTTTATGTATTGG
AAGCTTTCTTAATGTTGTGATTTATCGAATACCGAAAATCATGCAGCAAGAATGGCAACAAGAATGTCACCTATTACTCC
ATCCCGAGCAGGTGATCATTGATCCAGCTAAGCTAAGCTTAAGTACGCCCCCATCGAGTTGCCCTCACTGTCAGACCACC
ATTCGCTGGTATCAAAATATCCCCCTCATCAGCTGGTTGATTTTAGGTGGGAAATGTGCGCATTGCCAAACCCCAATTAA
TATACGTTATCCATTCATTGAACTACTCACTACACTGTGTGGGCTGGTGATCGTCATGGTCTTTGGCCCTAGTATCAAAA
TGCTGTGTGCTTTATTACTCAGCTATGTCTTGATTGCTTTAACCTTTATCGATTTTGATCATCAACTGCTTCCTGATCGT
TTAACATTAACACTCGCTGCTGCTGGTTTAGCAATCAATAGTTTTACGATTTTTACCACAGCCACTTTGGCCATTTGGGG
CTATATCATCGGTTTTTTATGTTTATGGATTGTGTACTACCTATTTAAACTATGTACAGGCAAAGAAGGAATGGGATATG
GCGACTTTAAACTTCTTGCAGCATTAGGTGCTTGGCTAGGCCCCTTTATGCTGCCCTTGATTATTTTACTCTCCTCTTGC
ATGGGGGCAATCATCGGTTTAATCCTCATCAAAGTACGCCAACAAAACCTGCCATTTGCTTTTGGTCCCTATATTGCTAT
TGCAGGATGGATTGCTTTACTCTGGGGCGAATCAATTATGCGTATTTATCTCACCCCATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

72.535

99.301

0.72
  pilD Acinetobacter baumannii D1279779

72.183

99.301

0.717
  pilD Vibrio cholerae strain A1552

56.667

94.406

0.535
  pilD Vibrio campbellii strain DS40M4

53.546

98.601

0.528
  pilD Neisseria gonorrhoeae MS11

43.173

94.755

0.409