Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QSG84_RS05180 Genome accession   NZ_CP127893
Coordinates   1105752..1106453 (+) Length   233 a.a.
NCBI ID   WP_317032100.1    Uniprot ID   A0AA97EXI3
Organism   Acinetobacter sp. SAAs470     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100752..1111453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS05170 (QSG84_05170) clpB 1102074..1104653 (-) 2580 WP_317032098.1 ATP-dependent chaperone ClpB -
  QSG84_RS05175 (QSG84_05175) - 1105183..1105605 (-) 423 WP_317032099.1 OsmC family protein -
  QSG84_RS05180 (QSG84_05180) crp 1105752..1106453 (+) 702 WP_317032100.1 cAMP-activated global transcriptional regulator CRP Regulator
  QSG84_RS05185 (QSG84_05185) - 1106618..1107667 (+) 1050 WP_317032101.1 NADP(H)-dependent aldo-keto reductase -
  QSG84_RS05190 (QSG84_05190) - 1107766..1108551 (-) 786 WP_317032102.1 M48 family metallopeptidase -
  QSG84_RS05195 (QSG84_05195) - 1108656..1108961 (-) 306 WP_317032103.1 hypothetical protein -
  QSG84_RS05200 (QSG84_05200) - 1109156..1110475 (-) 1320 WP_317032104.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26156.14 Da        Isoelectric Point: 7.5663

>NTDB_id=845119 QSG84_RS05180 WP_317032100.1 1105752..1106453(+) (crp) [Acinetobacter sp. SAAs470]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIIDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNPGDF
FGEMGLFEAKPQRTAEVRTREVCEIAEITYDNFNELCKQYPDLSHAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LCAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKILEEQGMIETDGKAILIFDTSLDAYSSTAKTKVN

Nucleotide


Download         Length: 702 bp        

>NTDB_id=845119 QSG84_RS05180 WP_317032100.1 1105752..1106453(+) (crp) [Acinetobacter sp. SAAs470]
ATGACTTCAAACTTTTCACAACTTAGCACCGATGCGCTGTCTCCAGGTCAACTTCCTGAGTCAGTAAAAGCATTATTAAA
ACGCGCATATATTAATCGCTATCCAAAGCGTACAACAATTATTGATGCTGGATCTGAGTCAAAATCTTTATATCTCATAT
TGAAAGGCTCAGTATCTATTATTCTTCGTGAAGACGACGATCGTGAAATAGTCGTTGCCTATTTAAATCCAGGGGATTTT
TTCGGGGAAATGGGACTTTTTGAAGCAAAACCTCAACGTACTGCTGAAGTACGTACACGTGAGGTTTGCGAAATTGCAGA
AATTACCTATGACAACTTTAATGAATTGTGCAAACAATATCCTGATTTAAGTCATGCGGTATTTGCGCAACTTGTACGTC
GTTTAAAAAATACCACACGCAAAGTAACAGACTTGGCATTTATTGATGTCTCTGGTCGTATTGCGCGTTGTTTAATTGAT
CTTTGCGCACAACCAGAAGCAATGATCCTACCTAATGGCCGACAGATCCGTATCACACGTCAAGAAATTGGTCGTATTGT
AGGCTGCTCACGAGAGATGGTCGGCCGTGTTCTTAAAATATTAGAAGAACAAGGTATGATCGAAACAGATGGCAAAGCAA
TTCTGATCTTTGATACTTCTTTAGACGCCTATTCCAGCACAGCAAAAACAAAAGTAAACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.892

95.279

0.876
  crp Vibrio cholerae strain A1552

47.826

88.841

0.425
  crp Haemophilus influenzae Rd KW20

48.187

82.833

0.399