Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QSG83_RS14150 Genome accession   NZ_CP127892
Coordinates   2717621..2718481 (+) Length   286 a.a.
NCBI ID   WP_178318339.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2712621..2723481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS14130 (QSG83_14140) secG 2713240..2713569 (-) 330 WP_004975868.1 preprotein translocase subunit SecG -
  QSG83_RS14135 (QSG83_14145) tpiA 2713583..2714374 (-) 792 WP_178318341.1 triose-phosphate isomerase -
  QSG83_RS14140 (QSG83_14150) pilB 2714652..2716364 (+) 1713 WP_178318340.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QSG83_RS14145 (QSG83_14155) pilC 2716395..2717621 (+) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  QSG83_RS14150 (QSG83_14160) pilD 2717621..2718481 (+) 861 WP_178318339.1 A24 family peptidase Machinery gene
  QSG83_RS14155 (QSG83_14165) coaE 2718491..2719090 (+) 600 WP_004975860.1 dephospho-CoA kinase -
  QSG83_RS14160 (QSG83_14170) - 2719096..2719974 (-) 879 WP_394804455.1 DMT family transporter -
  QSG83_RS14165 (QSG83_14175) rlmB 2720069..2720818 (-) 750 WP_178318338.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QSG83_RS14170 (QSG83_14180) - 2721007..2721330 (-) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32047.46 Da        Isoelectric Point: 8.0624

>NTDB_id=845105 QSG83_RS14150 WP_178318339.1 2717621..2718481(+) (pilD) [Acinetobacter towneri strain SAAt401]
MQELIAYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKITLSKPASTCPKCHHP
IRWYQNIPVLSWLVLRGKCSNCQNLISVRYPMIEVLTAVCALIVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPDR
YTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEPIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=845105 QSG83_RS14150 WP_178318339.1 2717621..2718481(+) (pilD) [Acinetobacter towneri strain SAAt401]
ATGCAAGAATTAATCGCGTACTTTATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTATTGG
CAGTTTTTTGAATGTGGTGATTTACCGCACCCCAAAAATGATGGAACAGGAGTGGCGTAATGACTGCCAAATGTTATTAC
ATCCTGAACAAGCCATTATTGATGAAAGTAAAATCACCCTGAGCAAACCTGCATCGACCTGCCCCAAATGTCACCACCCA
ATTCGTTGGTATCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTAGCAACTGCCAAAACCTGATCAG
CGTACGTTATCCAATGATTGAAGTATTAACCGCTGTTTGCGCCCTGATTGTGCTTGCGGTATTTGGCCCAACTGTACAAA
TGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGACCGT
TACACCTTGCCTTTGGCTGCACTGGGTTTGGCGGTTAACAGCTATGCCATCTATACTTCACCGACATCGGCAATTTGGGG
CTATGTGATTGGCTTCCTGTGCCTGTGGGTGGTGTATTACCTATTTAAAATCATCACAGGCAAAGAAGGCATGGGCTATG
GTGACTTTAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCAATGATGTTGCCTCTGATTGTGCTGCTTTCTTCCTTA
GTTGGGGCGATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTCGCGTTTGGTCCGTATATCGCCAT
TGCGGGTTGGATTGCCTTTTTATGGGGCGAGCCAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

80.351

99.65

0.801
  pilD Acinetobacter baumannii D1279779

80

99.65

0.797
  pilD Vibrio cholerae strain A1552

55.224

93.706

0.517
  pilD Vibrio campbellii strain DS40M4

52.416

94.056

0.493
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441