Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QRD24_RS25855 Genome accession   NZ_CP127874
Coordinates   4943170..4943532 (-) Length   120 a.a.
NCBI ID   WP_014457774.1    Uniprot ID   A0A8D3WU46
Organism   Priestia megaterium strain ELP1.24a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4938672..4951085 4943170..4943532 within 0


Gene organization within MGE regions


Location: 4938672..4951085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD24_RS25845 (QRD24_25845) - 4938672..4941302 (+) 2631 WP_060745866.1 DEAD/DEAH box helicase -
  QRD24_RS25850 (QRD24_25850) - 4941600..4942646 (+) 1047 WP_253351977.1 C40 family peptidase -
  QRD24_RS25855 (QRD24_25855) ssbB 4943170..4943532 (-) 363 WP_014457774.1 single-stranded DNA-binding protein Machinery gene
  QRD24_RS25860 (QRD24_25860) - 4943629..4944066 (+) 438 WP_014457773.1 YwpF-like family protein -
  QRD24_RS25865 (QRD24_25865) - 4944078..4944272 (-) 195 WP_221841140.1 hypothetical protein -
  QRD24_RS25870 (QRD24_25870) - 4944590..4945012 (+) 423 WP_028409692.1 helix-turn-helix transcriptional regulator -
  QRD24_RS25875 (QRD24_25875) fabZ 4945041..4945475 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QRD24_RS25880 (QRD24_25880) - 4945559..4946380 (-) 822 WP_221841141.1 flagellar hook-basal body protein -
  QRD24_RS25885 (QRD24_25885) - 4946404..4947228 (-) 825 WP_028409694.1 flagellar hook-basal body protein -
  QRD24_RS25890 (QRD24_25890) - 4947343..4948344 (-) 1002 WP_013059791.1 rod shape-determining protein -
  QRD24_RS25895 (QRD24_25895) spoIIID 4948531..4948794 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  QRD24_RS25900 (QRD24_25900) - 4949070..4949900 (-) 831 WP_028409695.1 M23 family metallopeptidase -
  QRD24_RS25905 (QRD24_25905) spoIID 4950063..4951085 (-) 1023 WP_028409696.1 stage II sporulation protein D -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=845047 QRD24_RS25855 WP_014457774.1 4943170..4943532(-) (ssbB) [Priestia megaterium strain ELP1.24a]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=845047 QRD24_RS25855 WP_014457774.1 4943170..4943532(-) (ssbB) [Priestia megaterium strain ELP1.24a]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAATATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508