Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QQ992_RS07645 Genome accession   NZ_CP127871
Coordinates   1700939..1703152 (+) Length   737 a.a.
NCBI ID   WP_286112862.1    Uniprot ID   -
Organism   Pseudomonas kurunegalensis strain ANKC.G2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695939..1708152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ992_RS07625 (QQ992_07625) - 1697815..1698438 (+) 624 WP_110740228.1 glutathione S-transferase -
  QQ992_RS07630 (QQ992_07630) - 1698572..1699504 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  QQ992_RS07635 (QQ992_07635) - 1699501..1700280 (+) 780 WP_019098550.1 ABC transporter permease -
  QQ992_RS07640 (QQ992_07640) - 1700284..1700796 (-) 513 Protein_1486 DUF2062 domain-containing protein -
  QQ992_RS07645 (QQ992_07645) comA 1700939..1703152 (+) 2214 WP_286112862.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQ992_RS07650 (QQ992_07650) exbB 1703544..1704179 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QQ992_RS07655 (QQ992_07655) - 1704176..1704610 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  QQ992_RS07660 (QQ992_07660) lpxK 1704610..1705611 (+) 1002 WP_286112864.1 tetraacyldisaccharide 4'-kinase -
  QQ992_RS07665 (QQ992_07665) - 1705656..1705841 (+) 186 WP_003247142.1 Trm112 family protein -
  QQ992_RS07670 (QQ992_07670) kdsB 1705838..1706602 (+) 765 WP_286112865.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQ992_RS07675 (QQ992_07675) - 1706602..1707066 (+) 465 WP_286112867.1 low molecular weight protein-tyrosine-phosphatase -
  QQ992_RS07680 (QQ992_07680) murB 1707063..1708082 (+) 1020 WP_286112868.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79234.07 Da        Isoelectric Point: 10.1948

>NTDB_id=844934 QQ992_RS07645 WP_286112862.1 1700939..1703152(+) (comA) [Pseudomonas kurunegalensis strain ANKC.G2]
MRTGMFALALGLLCLGFLPVLPSVGWLIALAACAVASLFTRVWPLGCFLLGLCWACGSAQLALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELDAARSRRAELPQRLQLSWFGGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLAVEANGRTAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGWWPARLPWLPWACGLAMTAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAQLPLLLALVVVLLVEPL
AALLPGFWLSFTAVATLLYCFSARLGGWRPWQAWTRAQWVIAIGLLPALLATGLPVSLSAPLANLVAVPWISLAVLPLAL
LGTVLLPLPGVGEALLWLAGGLLDLLFRGLALVAQQRPAWMPSALPVWAWLLVCLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPLGQVEVWQLDVGQGLAVLLRTRHHNLLYDAGPAKGDSDLGERVVLPTLHKLGVGSLDLMVISHAHADHAGGAG
AIRRGLPVRQVIGGEALEGVELQPCANGEQWAWDGVHFSLWHWAEGRSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
ATIETPRIDWLQAPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHGQVVERYRRYGVAIHDTAVEGALRLVLGRQG
EVEGVRGQRRFWRAQLD

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=844934 QQ992_RS07645 WP_286112862.1 1700939..1703152(+) (comA) [Pseudomonas kurunegalensis strain ANKC.G2]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGATGGTT
GATCGCGCTGGCTGCCTGCGCTGTCGCCAGTCTGTTCACCCGCGTGTGGCCGTTGGGCTGTTTTCTGCTGGGTTTGTGTT
GGGCTTGCGGGTCTGCTCAGCTGGCCCTTGATGATCGCCTGGCTGCTGGCCTGGATGGCCGCACCTTGTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGCCCGAACGGCACAAGGCGTGCGCTTCGAGCTGGACGCGGCACGCTCGCGGCGGGCCGAGCT
GCCGCAGCGCCTGCAGCTGAGCTGGTTCGGTGGGCCGCCTCTGCGGGCGGGCGAGCAGTGGCGGCTGGCCGTGACCTTGC
AGCGCCCGGCCGGGCTGTTGAACCCGCATGGGCCGGACCGCGAGGCGCAACTGCTGGCGCGGCGGGTGGGTGCCACGGGC
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTAACCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTCGCCGTCGA
GGCCAATGGCCGAACGGCGGCGTTGGTGGCGCTGGTGCTGGGTGATGGGGCGGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCTGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGCTGGGGTTGGTGGCCTGCACGGCTGCCCTGGTTGCCCTGGGCGTGTGGCTTGGCTATGACCGC
AGCACTGGCCTACGGTTGGCTGGCCGGTGCGGGCGTGCCGGTGCAGCGTGCCTGCCTAATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGTTTTCGTCACCTTGGCGCACAGTTGCCGCTGTTGCTGGCGCTGGTCGTGGTGTTGCTGGTCGAACCGCTG
GCGGCGCTGTTGCCGGGGTTCTGGCTGTCGTTTACCGCAGTCGCCACGCTTCTCTATTGCTTCAGTGCCCGGCTAGGGGG
CTGGCGGCCCTGGCAAGCCTGGACGCGGGCGCAATGGGTCATCGCCATCGGTTTGCTGCCAGCGTTGTTGGCGACTGGCC
TGCCGGTGAGCTTGAGTGCGCCGTTGGCCAATCTGGTAGCGGTGCCGTGGATCAGCCTGGCGGTGTTGCCGTTGGCGCTG
CTGGGCACGGTGCTGCTGCCATTGCCCGGGGTAGGGGAGGCGTTGTTATGGCTGGCGGGCGGGCTGCTGGACCTGTTGTT
CCGAGGGTTGGCGTTGGTGGCGCAACAGCGCCCGGCCTGGATGCCGTCAGCATTGCCAGTGTGGGCCTGGTTACTGGTTT
GTCTGGGGGCGCTGTTGGTGCTGCTGCCTCGGGGCGTGCCGTTGCGTGGGCTGGGTGGCGTGATGCTGTTGGCCCTGTGG
GTACCAAGGGAGCCGGTGCCGCTTGGGCAGGTCGAAGTCTGGCAACTGGACGTCGGCCAAGGGCTGGCAGTGCTGTTGCG
CACCCGCCATCACAACCTGCTTTACGATGCCGGGCCGGCCAAGGGTGACAGTGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCACAAGCTGGGGGTGGGCAGCCTTGACCTGATGGTTATCAGCCATGCGCATGCCGACCATGCGGGTGGGGCCGGG
GCAATTCGGCGTGGTTTGCCGGTCAGACAGGTGATCGGTGGTGAGGCGCTGGAGGGTGTTGAGTTGCAGCCTTGTGCCAA
TGGTGAACAGTGGGCATGGGATGGCGTGCACTTTTCGCTGTGGCACTGGGCTGAAGGGCGCAGCAGCAACGACCGCTCCT
GTGTGCTGCTGGTCGAGGCACAGGGCGAGCGCTTGCTGCTGGCGGGTGATATGGAGGCTGGCGCCGAGCGGGCCTGGCTG
GCGACCATTGAAACACCCCGTATTGATTGGTTGCAGGCGCCGCACCATGGTAGCCGCAGCTCTTCCACCGAGGCGTTCAT
CCGCGCTACCGCACCGCGTGGGGTATTGATTTCGCGGGGGCGTAACAACAGCTTCGGGCACCCGCATGGGCAGGTGGTGG
AGCGTTATCGGCGGTATGGGGTGGCGATACATGACACGGCGGTGGAGGGGGCGTTACGGTTGGTGCTGGGGCGGCAGGGG
GAGGTTGAAGGTGTTCGGGGGCAGCGGCGGTTTTGGCGGGCTCAACTGGATTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.306

97.693

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.705

100

0.374