Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QQ992_RS07650 Genome accession   NZ_CP127871
Coordinates   1703544..1704179 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas kurunegalensis strain ANKC.G2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698544..1709179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ992_RS07630 (QQ992_07630) - 1698572..1699504 (+) 933 WP_016715124.1 ABC transporter ATP-binding protein -
  QQ992_RS07635 (QQ992_07635) - 1699501..1700280 (+) 780 WP_019098550.1 ABC transporter permease -
  QQ992_RS07640 (QQ992_07640) - 1700284..1700796 (-) 513 Protein_1486 DUF2062 domain-containing protein -
  QQ992_RS07645 (QQ992_07645) comA 1700939..1703152 (+) 2214 WP_286112862.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQ992_RS07650 (QQ992_07650) exbB 1703544..1704179 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QQ992_RS07655 (QQ992_07655) - 1704176..1704610 (+) 435 WP_012271149.1 biopolymer transporter ExbD -
  QQ992_RS07660 (QQ992_07660) lpxK 1704610..1705611 (+) 1002 WP_286112864.1 tetraacyldisaccharide 4'-kinase -
  QQ992_RS07665 (QQ992_07665) - 1705656..1705841 (+) 186 WP_003247142.1 Trm112 family protein -
  QQ992_RS07670 (QQ992_07670) kdsB 1705838..1706602 (+) 765 WP_286112865.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQ992_RS07675 (QQ992_07675) - 1706602..1707066 (+) 465 WP_286112867.1 low molecular weight protein-tyrosine-phosphatase -
  QQ992_RS07680 (QQ992_07680) murB 1707063..1708082 (+) 1020 WP_286112868.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=844935 QQ992_RS07650 WP_016391244.1 1703544..1704179(+) (exbB) [Pseudomonas kurunegalensis strain ANKC.G2]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=844935 QQ992_RS07650 WP_016391244.1 1703544..1704179(+) (exbB) [Pseudomonas kurunegalensis strain ANKC.G2]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATTCCGGCCGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829