Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | QQ988_RS06210 | Genome accession | NZ_CP127869 |
| Coordinates | 1286661..1287635 (+) | Length | 324 a.a. |
| NCBI ID | WP_161388069.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain NG02 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1281661..1292635
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQ988_RS06175 (QQ988_06175) | rpmG | 1282144..1282293 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| QQ988_RS06180 (QQ988_06180) | - | 1282473..1283024 (+) | 552 | WP_002497935.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| QQ988_RS06185 (QQ988_06185) | - | 1283025..1284485 (+) | 1461 | WP_002497934.1 | rhomboid family intramembrane serine protease | - |
| QQ988_RS06190 (QQ988_06190) | - | 1284469..1284669 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| QQ988_RS06195 (QQ988_06195) | - | 1284669..1285655 (+) | 987 | WP_002473556.1 | ROK family glucokinase | - |
| QQ988_RS06200 (QQ988_06200) | - | 1285655..1285981 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| QQ988_RS06205 (QQ988_06205) | - | 1285981..1286604 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| QQ988_RS06210 (QQ988_06210) | comGA | 1286661..1287635 (+) | 975 | WP_161388069.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| QQ988_RS06215 (QQ988_06215) | comGB | 1287607..1288674 (+) | 1068 | WP_002497932.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| QQ988_RS06220 (QQ988_06220) | comGC | 1288692..1289009 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| QQ988_RS06225 (QQ988_06225) | comGD | 1288999..1289436 (+) | 438 | WP_161388070.1 | competence type IV pilus minor pilin ComGD | - |
| QQ988_RS06230 (QQ988_06230) | - | 1289423..1289716 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| QQ988_RS06235 (QQ988_06235) | - | 1289640..1290131 (+) | 492 | WP_059223718.1 | competence type IV pilus minor pilin ComGF | - |
| QQ988_RS06240 (QQ988_06240) | - | 1290296..1290808 (+) | 513 | WP_002497929.1 | shikimate kinase | - |
| QQ988_RS06245 (QQ988_06245) | gcvT | 1291026..1292117 (+) | 1092 | WP_237635261.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37256.31 Da Isoelectric Point: 8.8265
>NTDB_id=844911 QQ988_RS06210 WP_161388069.1 1286661..1287635(+) (comGA) [Staphylococcus epidermidis strain NG02]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAVLRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNSRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAVLRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNSRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=844911 QQ988_RS06210 WP_161388069.1 1286661..1287635(+) (comGA) [Staphylococcus epidermidis strain NG02]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATAACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCGTTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTCTCGTCAACTAGTATCAGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATAACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCGTTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTCTCGTCAACTAGTATCAGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
69.753 |
100 |
0.698 |
| comGA | Staphylococcus aureus N315 |
69.753 |
100 |
0.698 |