Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QQ988_RS06215 Genome accession   NZ_CP127869
Coordinates   1287607..1288674 (+) Length   355 a.a.
NCBI ID   WP_002497932.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NG02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282607..1293674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ988_RS06185 (QQ988_06185) - 1283025..1284485 (+) 1461 WP_002497934.1 rhomboid family intramembrane serine protease -
  QQ988_RS06190 (QQ988_06190) - 1284469..1284669 (+) 201 WP_002446537.1 YqgQ family protein -
  QQ988_RS06195 (QQ988_06195) - 1284669..1285655 (+) 987 WP_002473556.1 ROK family glucokinase -
  QQ988_RS06200 (QQ988_06200) - 1285655..1285981 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  QQ988_RS06205 (QQ988_06205) - 1285981..1286604 (+) 624 WP_002446535.1 MBL fold metallo-hydrolase -
  QQ988_RS06210 (QQ988_06210) comGA 1286661..1287635 (+) 975 WP_161388069.1 competence type IV pilus ATPase ComGA Machinery gene
  QQ988_RS06215 (QQ988_06215) comGB 1287607..1288674 (+) 1068 WP_002497932.1 competence type IV pilus assembly protein ComGB Machinery gene
  QQ988_RS06220 (QQ988_06220) comGC 1288692..1289009 (+) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  QQ988_RS06225 (QQ988_06225) comGD 1288999..1289436 (+) 438 WP_161388070.1 competence type IV pilus minor pilin ComGD -
  QQ988_RS06230 (QQ988_06230) - 1289423..1289716 (+) 294 WP_001831116.1 hypothetical protein -
  QQ988_RS06235 (QQ988_06235) - 1289640..1290131 (+) 492 WP_059223718.1 competence type IV pilus minor pilin ComGF -
  QQ988_RS06240 (QQ988_06240) - 1290296..1290808 (+) 513 WP_002497929.1 shikimate kinase -
  QQ988_RS06245 (QQ988_06245) gcvT 1291026..1292117 (+) 1092 WP_237635261.1 glycine cleavage system aminomethyltransferase GcvT -
  QQ988_RS06250 (QQ988_06250) gcvPA 1292137..1293483 (+) 1347 WP_002456181.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42322.54 Da        Isoelectric Point: 10.1330

>NTDB_id=844912 QQ988_RS06215 WP_002497932.1 1287607..1288674(+) (comGB) [Staphylococcus epidermidis strain NG02]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPAALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVHIYRNEQDNDFLKFLGDYLFKEANKGLSLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=844912 QQ988_RS06215 WP_002497932.1 1287607..1288674(+) (comGB) [Staphylococcus epidermidis strain NG02]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGCTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCATATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTTTCATTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATATTTAGTTATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.719

100

0.499
  comGB Staphylococcus aureus N315

49.719

100

0.499