Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   L6410_RS03250 Genome accession   NZ_AP024276
Coordinates   646499..647500 (+) Length   333 a.a.
NCBI ID   WP_237396673.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 641499..652500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS03235 (SUT286_06030) - 642718..643608 (-) 891 WP_336512757.1 DUF975 family protein -
  L6410_RS03240 (SUT286_06040) tgt 643843..644985 (+) 1143 WP_172075792.1 tRNA guanosine(34) transglycosylase Tgt -
  L6410_RS03245 (SUT286_06050) - 645208..646293 (-) 1086 WP_237396003.1 M24 family metallopeptidase -
  L6410_RS03250 (SUT286_06060) ccpA 646499..647500 (+) 1002 WP_237396673.1 catabolite control protein A Regulator
  L6410_RS03255 (SUT286_06070) - 647617..648660 (+) 1044 WP_024396667.1 glycosyltransferase family 4 protein -
  L6410_RS03260 (SUT286_06080) - 648681..649994 (+) 1314 WP_024391251.1 glycosyltransferase family 4 protein -
  L6410_RS03265 (SUT286_06090) - 650009..650383 (+) 375 WP_237396005.1 hypothetical protein -
  L6410_RS03270 (SUT286_06100) - 650653..650979 (+) 327 WP_419580009.1 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36707.63 Da        Isoelectric Point: 5.3145

>NTDB_id=84470 L6410_RS03250 WP_237396673.1 646499..647500(+) (ccpA) [Streptococcus parasuis strain SUT-286]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGVIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNQKIAFVSGPLVDDINGKVRFSGYKEGLQASGLEFNEGLVFESKYKYEEGYALAERVLNAG
ATAAYVAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=84470 L6410_RS03250 WP_237396673.1 646499..647500(+) (ccpA) [Streptococcus parasuis strain SUT-286]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAATACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGCCTACTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTGTTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTAGTCAATACATTGTTTTCTAAGCAAGTCGATGGTGTTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCGCGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTACTTGCTAAGAATAACCAAAAGATTGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTTCAAGCGAGTGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGCCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATGTTGCTGAAGATGAAATTGCTGCTGGTTTGTTAAATGGTATTAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CAATCTACGACATTGGTGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

100

0.793
  ccpA Streptococcus pneumoniae D39

78.979

100

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577

Multiple sequence alignment