Detailed information NTG0844649

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QR297_RS02540
• Genome accession: NZ_CP127845
• Coordinates: 550419..551285 (-)
• Length: 288 a.a.
• NCBI ID: WP_102084225.1
• Uniprot ID: -
• Organism: Pseudomonas shirazica strain HY376
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 545419..556285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR297_RS02505 (QR297_02505)	-	545764..547059 (-)	1296	WP_003260618.1	NAD(P)/FAD-dependent oxidoreductase	-
QR297_RS02510 (QR297_02510)	-	547144..547317 (-)	174	WP_013970765.1	DUF3094 family protein	-
QR297_RS02515 (QR297_02515)	-	547451..548080 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
QR297_RS02520 (QR297_02520)	-	548136..548567 (-)	432	WP_015268860.1	hypothetical protein	-
QR297_RS02525 (QR297_02525)	-	548654..549361 (+)	708	WP_309672388.1	energy-coupling factor ABC transporter permease	-
QR297_RS02530 (QR297_02530)	yacG	549599..549799 (-)	201	WP_003260624.1	DNA gyrase inhibitor YacG	-
QR297_RS02535 (QR297_02535)	coaE	549796..550419 (-)	624	WP_100413056.1	dephospho-CoA kinase	-
QR297_RS02540 (QR297_02540)	pilD	550419..551285 (-)	867	WP_102084225.1	A24 family peptidase	Machinery gene
QR297_RS02545 (QR297_02545)	-	551288..552496 (-)	1209	WP_309672393.1	type II secretion system F family protein	-
QR297_RS02550 (QR297_02550)	pilA	552713..553123 (+)	411	WP_047934243.1	pilin	Machinery gene
QR297_RS02560 (QR297_02560)	-	553931..554224 (+)	294	WP_309672395.1	hypothetical protein	-
QR297_RS02565 (QR297_02565)	-	554507..555487 (+)	981	WP_309673826.1	integrase domain-containing protein	-
QR297_RS02570 (QR297_02570)	-	555484..555771 (+)	288	WP_309672397.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32001.13 Da
• Isoelectric Point: 7.9596

>NTDB_id=844649 QR297_RS02540 WP_102084225.1 550419..551285(-) (pilD) [Pseudomonas shirazica strain HY376]
MTLWTLLAEQPAYFLTLATVLGLLVGSFLNVLVYRLPIMLERQWQREAQEMLELPTTPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVELASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAIGTAIPFGPYLAIAGWIAVLWGDEIYASYTNLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=844649 QR297_RS02540 WP_102084225.1 550419..551285(-) (pilD) [Pseudomonas shirazica strain HY376]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTCGGCCTGCTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAGT
TGCCGACCACGCCGCACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGCGCGCATCGGATTCGCGCA
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCATTGGTGGAGTTAGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGTTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTACGTCCCGCTGACCAGTGCGTTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCCTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGCCTGTTGCGCTTGCGCCGCCATGCCATTGGCACGGCGATCCCGTTTGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACACAAACCTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.909	95.486	0.524
pilD	Acinetobacter baumannii D1279779	51.786	97.222	0.503
pilD	Acinetobacter nosocomialis M2	51.071	97.222	0.497
pilD	Vibrio campbellii strain DS40M4	50.178	97.569	0.49
pilD	Neisseria gonorrhoeae MS11	51.698	92.014	0.476