Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRS93_RS08825 Genome accession   NZ_CP127842
Coordinates   1800477..1800968 (-) Length   163 a.a.
NCBI ID   WP_002993238.1    Uniprot ID   A0A9X5LZM9
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1795477..1805968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS08810 (QRS93_08810) - 1798254..1799198 (+) 945 WP_003059456.1 magnesium transporter CorA family protein -
  QRS93_RS08815 (QRS93_08815) - 1799330..1799986 (+) 657 WP_003059462.1 DUF1129 domain-containing protein -
  QRS93_RS08820 (QRS93_08820) rpsR 1800119..1800358 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  QRS93_RS08825 (QRS93_08825) ssbA 1800477..1800968 (-) 492 WP_002993238.1 single-stranded DNA-binding protein Machinery gene
  QRS93_RS08830 (QRS93_08830) rpsF 1800990..1801280 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  QRS93_RS10350 - 1802239..1802532 (-) 294 WP_014612572.1 hypothetical protein -
  QRS93_RS08835 (QRS93_08835) mutY 1802697..1803863 (+) 1167 WP_042357990.1 A/G-specific adenine glycosylase -
  QRS93_RS08840 (QRS93_08840) trxA 1803914..1804228 (-) 315 WP_003052691.1 thioredoxin -
  QRS93_RS08845 (QRS93_08845) - 1804451..1805770 (+) 1320 Protein_1697 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17995.78 Da        Isoelectric Point: 4.8894

>NTDB_id=844637 QRS93_RS08825 WP_002993238.1 1800477..1800968(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=844637 QRS93_RS08825 WP_002993238.1 1800477..1800968(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCTGCTGAAAATTTAGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACGGGTCGCATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAACGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.626
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368