Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VZG88_RS05670 Genome accession   NZ_CP143871
Coordinates   1152344..1152706 (-) Length   120 a.a.
NCBI ID   WP_208676635.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147344..1157706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS05660 (VZG88_05660) - 1147511..1151725 (-) 4215 WP_338438647.1 GAF domain-containing protein -
  VZG88_RS05665 (VZG88_05665) - 1151812..1152318 (-) 507 WP_208678991.1 chemotaxis protein CheW -
  VZG88_RS05670 (VZG88_05670) pilH 1152344..1152706 (-) 363 WP_208676635.1 response regulator Machinery gene
  VZG88_RS05675 (VZG88_05675) - 1152759..1153949 (-) 1191 WP_323368536.1 response regulator -
  VZG88_RS05680 (VZG88_05680) - 1154575..1155321 (+) 747 WP_338438648.1 response regulator transcription factor -
  VZG88_RS05685 (VZG88_05685) - 1155334..1156575 (+) 1242 WP_208678989.1 ATP-binding protein -
  VZG88_RS05690 (VZG88_05690) - 1156590..1157321 (+) 732 WP_208678988.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13190.15 Da        Isoelectric Point: 4.5271

>NTDB_id=844577 VZG88_RS05670 WP_208676635.1 1152344..1152706(-) (pilH) [Synechococcus elongatus IITB6]
MSTVLVVEDTASEMELITTYLQASGYTVIGANNAQDALSKVDLYKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVTKPFKQEDLVKAVRSVDS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=844577 VZG88_RS05670 WP_208676635.1 1152344..1152706(-) (pilH) [Synechococcus elongatus IITB6]
ATGAGCACAGTGCTGGTTGTTGAAGATACGGCTTCTGAAATGGAGCTGATTACCACTTACCTACAGGCCAGTGGCTACAC
CGTGATTGGGGCGAATAACGCCCAAGATGCTTTAAGTAAGGTGGATTTATACAAACCAGATGTCGTGGTCACGGATGTGG
TGATGCCTGGCATGAGTGGTTTTGAACTCTGCCGCAGCCTGAAGAAAAATCCTGAGACTGAAAAACTGCCGGTGATTGTC
TGCAGTTCCAAAAATCAGGAAATCGATCGGTTGTGGGCGATGAAGCAGGGAGCCGATGCTTACGTAACCAAGCCTTTTAA
ACAAGAGGATTTGGTGAAAGCTGTTCGTTCTGTTGACTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.61

98.333

0.458
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367