Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VZH39_RS05465 Genome accession   NZ_CP143862
Coordinates   1136370..1136732 (-) Length   120 a.a.
NCBI ID   WP_208676635.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131370..1141732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS05460 (VZH39_05460) - 1135838..1136344 (-) 507 WP_208676637.1 chemotaxis protein CheW -
  VZH39_RS05465 (VZH39_05465) pilH 1136370..1136732 (-) 363 WP_208676635.1 response regulator Machinery gene
  VZH39_RS05470 (VZH39_05470) - 1136785..1138008 (-) 1224 WP_338431520.1 response regulator -
  VZH39_RS05475 (VZH39_05475) - 1138601..1139347 (+) 747 WP_338438883.1 response regulator transcription factor -
  VZH39_RS05480 (VZH39_05480) - 1139360..1140601 (+) 1242 WP_338431522.1 ATP-binding protein -
  VZH39_RS05485 (VZH39_05485) - 1140616..1141347 (+) 732 WP_208676627.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13190.15 Da        Isoelectric Point: 4.5271

>NTDB_id=844527 VZH39_RS05465 WP_208676635.1 1136370..1136732(-) (pilH) [Synechococcus elongatus IITB8]
MSTVLVVEDTASEMELITTYLQASGYTVIGANNAQDALSKVDLYKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVTKPFKQEDLVKAVRSVDS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=844527 VZH39_RS05465 WP_208676635.1 1136370..1136732(-) (pilH) [Synechococcus elongatus IITB8]
ATGAGCACAGTGCTGGTTGTTGAAGATACGGCTTCTGAAATGGAGCTGATTACCACTTACCTACAGGCCAGTGGCTACAC
CGTGATTGGGGCGAATAACGCCCAAGATGCTTTAAGTAAGGTGGATTTATACAAACCAGATGTCGTGGTCACGGATGTGG
TGATGCCTGGCATGAGTGGTTTTGAACTCTGCCGCAGCCTGAAGAAAAATCCTGAGACTGAAAAACTGCCGGTGATTGTC
TGCAGTTCCAAAAATCAGGAAATCGATCGGTTGTGGGCGATGAAGCAGGGAGCCGATGCTTACGTAACCAAGCCTTTTAA
ACAAGAGGATTTGGTGAAAGCTGTTCGTTCTGTTGACTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.61

98.333

0.458
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367