Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VZH09_RS12125 Genome accession   NZ_CP143859
Coordinates   2419843..2421843 (-) Length   666 a.a.
NCBI ID   WP_338461745.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2414843..2426843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS12100 (VZH09_12100) - 2415949..2416563 (+) 615 WP_338461742.1 CPP1-like family protein -
  VZH09_RS12105 (VZH09_12105) hslO 2416615..2417508 (-) 894 WP_208674579.1 Hsp33 family molecular chaperone HslO -
  VZH09_RS12110 (VZH09_12110) - 2417543..2418247 (-) 705 WP_208678127.1 ABC transporter ATP-binding protein -
  VZH09_RS12115 (VZH09_12115) - 2418323..2419318 (+) 996 WP_338461743.1 Sll0314/Alr1548 family TPR repeat-containing protein -
  VZH09_RS12120 (VZH09_12120) - 2419322..2419777 (+) 456 WP_338438163.1 DUF3531 family protein -
  VZH09_RS12125 (VZH09_12125) uvrB 2419843..2421843 (-) 2001 WP_338461745.1 excinuclease ABC subunit UvrB Machinery gene
  VZH09_RS12130 (VZH09_12130) - 2421965..2422678 (+) 714 WP_208678124.1 DevA family ABC transporter ATP-binding protein -
  VZH09_RS12135 (VZH09_12135) - 2422781..2423443 (+) 663 WP_208674571.1 FHA domain-containing protein -
  VZH09_RS12140 (VZH09_12140) - 2423449..2424210 (+) 762 WP_338461747.1 HAD family hydrolase -
  VZH09_RS12145 (VZH09_12145) - 2424207..2425562 (-) 1356 WP_338461748.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76045.46 Da        Isoelectric Point: 4.9855

>NTDB_id=844503 VZH09_RS12125 WP_338461745.1 2419843..2421843(-) (uvrB) [Synechococcus elongatus IITB7]
MTPFQLQARYQPMGDQPTAIAQLVQKVQAGIPYQTLLGATGTGKTFTIANVIEQVGRPALVLAHNKTLAAQLCNELREFF
PNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDMLRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPL
EVGAEVNMREVLRQLVDVQYSRNDLESGRGRFRVKGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRLN
IYPARHFVTPEERLETAIAEIKAELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYCNGVENYARHLAGREPGSPP
ECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLIDHGFRLPSAADNRPLKSEEFWDKVRQCIFVSATPGDWEVG
QSEIHIVEQVIRPTGVVDPEVFVRPTEGQVDDLLTEIQQRVSRQERALITTLTKRMAEDLTDYLGDRGVKVRYLHSEINS
IERIEILQDLRNGAFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADRLTESME
KAISETERRRRIQLEYNQRHQITPQPISKRSSNAILSFLEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLETQMKEAA
KNLEFEEAAQYRDRIKKLRERLVGRH

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=844503 VZH09_RS12125 WP_338461745.1 2419843..2421843(-) (uvrB) [Synechococcus elongatus IITB7]
ATGACGCCCTTTCAACTACAAGCCCGCTATCAACCAATGGGAGATCAGCCCACTGCGATCGCGCAGTTGGTGCAGAAAGT
TCAGGCAGGGATTCCCTATCAAACGTTGCTGGGTGCAACCGGAACTGGCAAGACTTTTACGATCGCCAATGTGATTGAAC
AGGTGGGGCGACCCGCGCTAGTTCTCGCTCACAATAAAACGTTGGCGGCGCAGCTTTGTAATGAGCTACGCGAGTTTTTT
CCGAATAATGCAGTTGAGTATTTCATCAGCTATTACGACTACTATCAGCCCGAAGCCTATATCCCCGTCACCGATACTTA
CATCGCCAAAACAGCTTCGATCAACGAAGAGATCGATATGTTGCGGCACTCTGCCACTCGCAACCTCTTTGAGCGGCGAG
ATGTGATTGTCGTCGCCTCAATTAGCTGCATCTATGGCCTCGGCATTCCAAGTGAATATTTGAAGGCAGCCATCCCCCTA
GAAGTTGGGGCTGAAGTCAATATGCGCGAGGTGCTGCGCCAACTTGTCGATGTCCAATACAGTCGCAACGACCTAGAGTC
AGGTCGTGGTCGGTTTCGGGTCAAGGGCGATGTTCTGGAAATTGGCCCTGCCTACGAAGATCGGATTATTCGAGTTGAGT
TCTTTGGCGATGAAATCGATGCCATTCGCTACATCGATCCCGTGACCGGCGAAATTCTCCAAAGCCTCGATCGCCTCAAC
ATCTATCCGGCTCGCCACTTTGTCACCCCTGAGGAGCGACTAGAAACCGCGATCGCGGAGATTAAAGCGGAGCTCAATCA
ACAGCTGCTGACCTTACAAGCCGAAGGCAAACTAGTTGAAGCCCAACGCTTGGAGCAACGCACCCGCTATGACCTCGAAA
TGCTGCAGGAAGTAGGCTATTGCAACGGCGTGGAAAACTATGCCAGGCACCTCGCGGGCCGCGAACCAGGATCACCGCCG
GAATGTTTAATTGACTATTTCCCCAAAGATTGGCTCTTAGTGGTTGATGAATCCCACGTGACGGTACCCCAGCTACGCGG
GATGTACAACGGCGATCAATCCCGCAAAAAAGTGTTGATTGATCATGGCTTTCGACTACCTAGCGCAGCCGATAACCGCC
CTTTGAAGTCGGAGGAGTTTTGGGACAAAGTGCGACAGTGCATTTTTGTCTCAGCTACGCCTGGCGATTGGGAAGTGGGA
CAATCGGAAATCCATATTGTCGAACAAGTCATCCGACCAACAGGGGTGGTTGATCCTGAGGTTTTTGTCCGACCCACAGA
AGGCCAAGTCGATGATTTACTCACAGAAATTCAGCAGCGGGTCAGCCGTCAAGAGCGGGCTCTGATTACAACACTGACCA
AACGGATGGCCGAGGACTTAACTGATTACTTGGGCGATCGCGGTGTGAAAGTTCGCTATCTCCACTCCGAGATCAATTCG
ATCGAACGGATTGAAATCCTTCAAGATCTACGCAACGGCGCTTTTGATGTCTTGATTGGCGTCAATTTACTGCGGGAAGG
CTTGGATTTACCTGAAGTCTCTTTGGTCGCAATCCTTGATGCCGATAAAGAGGGCTTTTTGCGGACTGAGCGCAGCTTAA
TTCAAACGATCGGTCGTGCGGCTCGCCACATCAACGGCCAGGCAATTCTCTATGCCGATCGTCTGACCGAAAGCATGGAA
AAAGCGATCAGCGAAACCGAGCGTCGGCGACGCATCCAACTGGAATATAACCAACGCCATCAGATTACGCCTCAGCCGAT
CAGCAAGCGATCGAGCAACGCCATTCTGTCGTTCCTCGAAGTCTCGCGGCGACTGAATAAACAAGAACTGGAAGTTGCCG
TCAGCCAAGCAGATGATCTTTCCTTGGAGGAGATTCCGAATCTGATTACTCAGCTAGAAACACAAATGAAAGAAGCCGCC
AAAAATCTTGAATTTGAAGAGGCAGCTCAATACCGCGATCGCATCAAAAAGCTGCGTGAGCGACTCGTCGGTCGTCACTA
A

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(627-660)

UvrB interaction domain (UvrB_inter)

(158-247)

Helicase conserved C-terminal domain (Helicase_C)

(434-542)

Type III restriction enzyme, res subunit (ResIII)

(15-118)

Ultra-violet resistance protein B (UvrB)

(550-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.815

98.799

0.581
  uvrB Streptococcus pneumoniae R6

58.815

98.799

0.581
  uvrB Streptococcus pneumoniae D39

58.815

98.799

0.581