Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VZG28_RS12845 Genome accession   NZ_CP143853
Coordinates   2546046..2548046 (-) Length   666 a.a.
NCBI ID   WP_208674575.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2541046..2553046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS12820 (VZG28_12820) - 2542156..2542770 (+) 615 WP_208674581.1 CPP1-like family protein -
  VZG28_RS12825 (VZG28_12825) hslO 2542822..2543715 (-) 894 WP_208674579.1 Hsp33 family molecular chaperone HslO -
  VZG28_RS12830 (VZG28_12830) - 2543750..2544454 (-) 705 WP_208674577.1 ABC transporter ATP-binding protein -
  VZG28_RS12835 (VZG28_12835) - 2544530..2545525 (+) 996 WP_208676776.1 Sll0314/Alr1548 family TPR repeat-containing protein -
  VZG28_RS12840 (VZG28_12840) - 2545529..2545984 (+) 456 WP_338438163.1 DUF3531 family protein -
  VZG28_RS12845 (VZG28_12845) uvrB 2546046..2548046 (-) 2001 WP_208674575.1 excinuclease ABC subunit UvrB Machinery gene
  VZG28_RS12850 (VZG28_12850) - 2548168..2548881 (+) 714 WP_338441505.1 DevA family ABC transporter ATP-binding protein -
  VZG28_RS12855 (VZG28_12855) - 2548984..2549646 (+) 663 WP_208674571.1 FHA domain-containing protein -
  VZG28_RS12860 (VZG28_12860) - 2549652..2550413 (+) 762 WP_338441506.1 HAD family hydrolase -
  VZG28_RS12865 (VZG28_12865) - 2550410..2551765 (-) 1356 WP_338441507.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76017.36 Da        Isoelectric Point: 4.9454

>NTDB_id=844454 VZG28_RS12845 WP_208674575.1 2546046..2548046(-) (uvrB) [Synechococcus elongatus IITB4]
MTPFQLQARYQPMGDQPTAIAQLVQKVQAGIPYQTLLGATGTGKTFTIANVIEQVGRPALVLAHNKTLAAQLCNELREFF
PNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDMLRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPL
EVGAEVNMREVLRQLVDVQYSRNDLESGRGRFRVKGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRLN
IYPARHFVTPEERLETAIAEIKAELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYCNGVENYARHLAGREPGSPP
ECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLIDHGFRLPSAADNRPLKSEEFWDKVRQCIFVSATPGDWEVG
QSETHIVEQVIRPTGVVDPEVFVRPTEGQVDDLLTEIQQRVSRQERALITTLTKRMAEDLTDYLGDRGVKVRYLHSEINS
IERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADRLTESME
KAIGETERRRRIQLEYNQRHQITPQPISKRSSNAILSFLEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAA
KNLEFEEAAQYRDRIKKLRERLVGRH

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=844454 VZG28_RS12845 WP_208674575.1 2546046..2548046(-) (uvrB) [Synechococcus elongatus IITB4]
ATGACGCCCTTTCAACTGCAAGCCCGCTATCAACCAATGGGAGATCAGCCCACTGCGATCGCGCAGTTGGTGCAGAAAGT
TCAGGCAGGGATTCCCTATCAAACGTTGCTGGGTGCAACCGGAACTGGCAAGACTTTTACGATCGCTAATGTGATTGAAC
AGGTGGGGCGACCCGCGCTAGTTCTCGCTCACAATAAAACGTTGGCGGCGCAGCTTTGTAATGAGCTACGCGAGTTTTTT
CCGAATAATGCAGTTGAGTATTTCATCAGCTATTACGACTACTATCAGCCCGAAGCCTACATCCCCGTCACCGATACTTA
CATCGCCAAAACAGCGTCGATCAACGAAGAGATCGATATGTTGCGGCACTCCGCCACTCGCAACCTCTTCGAGCGGCGCG
ATGTGATTGTTGTTGCCTCTATTAGCTGCATCTATGGCCTCGGCATCCCCAGTGAATATTTGAAGGCAGCCATCCCCCTA
GAAGTCGGGGCTGAAGTCAATATGCGCGAGGTGCTACGCCAACTCGTCGATGTCCAATACAGTCGCAACGACCTAGAGTC
AGGTCGTGGTCGGTTTCGGGTCAAGGGCGATGTTCTGGAAATTGGCCCTGCCTACGAAGATCGGATTATTCGAGTTGAGT
TCTTTGGCGATGAAATCGATGCCATTCGCTACATCGATCCCGTGACTGGTGAAATTCTCCAAAGCCTCGATCGCCTCAAC
ATTTATCCGGCCCGCCACTTTGTCACCCCTGAGGAGCGACTAGAAACCGCGATCGCCGAGATTAAAGCGGAGCTCAATCA
ACAGCTGCTGACCTTACAAGCCGAAGGCAAACTAGTTGAAGCCCAACGCTTGGAGCAACGCACCCGCTATGACCTCGAAA
TGCTGCAGGAAGTAGGCTATTGCAACGGCGTGGAAAACTATGCCAGGCACCTCGCGGGCCGCGAACCAGGATCACCGCCG
GAATGTTTAATCGACTATTTCCCCAAAGATTGGCTCTTGGTGGTTGATGAATCCCACGTGACGGTACCCCAGCTACGCGG
GATGTACAACGGCGATCAATCCCGCAAAAAAGTGTTGATTGATCATGGCTTTCGACTGCCTAGCGCGGCGGATAACCGCC
CTTTGAAGTCGGAGGAGTTTTGGGACAAAGTGCGGCAGTGCATTTTTGTCTCAGCCACGCCCGGCGATTGGGAAGTGGGG
CAATCGGAAACCCATATTGTCGAACAAGTCATCCGACCAACAGGGGTGGTTGACCCTGAGGTTTTTGTCCGACCCACAGA
AGGCCAAGTTGATGATTTACTCACAGAAATTCAGCAGCGGGTCAGCCGTCAAGAGCGGGCTCTGATTACAACACTGACCA
AACGGATGGCCGAGGACTTGACTGATTACTTGGGCGATCGCGGTGTTAAAGTTCGCTATCTCCACTCCGAGATCAATTCG
ATTGAACGGATTGAAATTCTTCAAGATCTACGCAACGGCGATTTTGATGTCTTGATTGGCGTCAATTTACTGCGGGAAGG
CTTGGATTTACCTGAAGTCTCATTGGTCGCAATCCTTGATGCTGACAAAGAGGGCTTTTTGCGGACTGAGCGCAGCTTAA
TTCAAACGATCGGTCGTGCGGCTCGCCACATCAACGGCCAGGCAATTCTCTATGCCGATCGCCTGACCGAAAGCATGGAA
AAAGCGATTGGCGAAACCGAGCGACGGCGACGCATCCAACTGGAATATAACCAACGCCATCAGATTACGCCTCAGCCGAT
CAGCAAGCGATCGAGTAATGCCATTCTGTCGTTCCTCGAAGTCTCGCGGCGACTGAATAAACAAGAACTAGAAGTTGCCG
TCAGCCAAGCGGATGATCTTTCCTTGGAGGAAATTCCAAATCTGATTACTCAGCTAGAAGCACAAATGAAAGAAGCCGCC
AAAAATCTTGAATTTGAAGAGGCAGCTCAATATCGCGATCGCATCAAAAAGCTGCGTGAGCGACTCGTCGGTCGTCACTG
A

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-247)

Helicase conserved C-terminal domain (Helicase_C)

(434-542)

UvrB/uvrC motif (UVR)

(627-660)

Ultra-violet resistance protein B (UvrB)

(550-590)

Type III restriction enzyme, res subunit (ResIII)

(15-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.967

98.799

0.583
  uvrB Streptococcus pneumoniae R6

58.967

98.799

0.583
  uvrB Streptococcus pneumoniae D39

58.967

98.799

0.583