Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   VZG28_RS09205 Genome accession   NZ_CP143853
Coordinates   1851187..1852215 (+) Length   342 a.a.
NCBI ID   WP_338441047.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1846187..1857215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS09180 (VZG28_09180) glyQ 1846735..1847613 (-) 879 WP_208675661.1 glycine--tRNA ligase subunit alpha -
  VZG28_RS09185 (VZG28_09185) - 1847716..1848666 (-) 951 WP_338441045.1 DUF4335 domain-containing protein -
  VZG28_RS09190 (VZG28_09190) - 1848673..1849359 (-) 687 WP_228383202.1 DUF3038 domain-containing protein -
  VZG28_RS09195 (VZG28_09195) - 1849467..1849982 (+) 516 WP_338429491.1 adenine phosphoribosyltransferase -
  VZG28_RS09200 (VZG28_09200) - 1849986..1850981 (+) 996 WP_338441046.1 ABC transporter permease -
  VZG28_RS09205 (VZG28_09205) pilM 1851187..1852215 (+) 1029 WP_338441047.1 type IV pilus assembly protein PilM Machinery gene
  VZG28_RS09210 (VZG28_09210) - 1852218..1852940 (+) 723 WP_338441048.1 PilN domain-containing protein -
  VZG28_RS09215 (VZG28_09215) - 1852937..1853740 (+) 804 WP_338441049.1 pilus assembly protein PilO -
  VZG28_RS09220 (VZG28_09220) - 1853804..1856107 (+) 2304 WP_338441050.1 secretin N-terminal domain-containing protein -
  VZG28_RS09225 (VZG28_09225) - 1856200..1856913 (-) 714 WP_338441051.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37666.18 Da        Isoelectric Point: 4.2815

>NTDB_id=844444 VZG28_RS09205 WP_338441047.1 1851187..1852215(+) (pilM) [Synechococcus elongatus IITB4]
MEITPERINLAHIGRKGNRLLLQDFVSVDLPDGLFQDGRVIDSFSLSDLLRTAISDNRIKTKKVSTAVPGREVITRLLPM
PAELDDAELHETLLNQEAALFLPFPREEADIDYLKLDYFLDIDEVEKLHVLLVATRRQVTDTYLDLFAQAGLTPDIVEVG
SFALIRTIRESLRQYGLQEAVILLNIEYDLTEIVIIVGGVPRFSRTIAMGTQQWQRAAAQAGLENIGRGLDFLQGQALSL
LEPPADLLSQGLVRSAADLCDEVRRSADFYLSQESDIEVAKLYVAGPGSALPTLPEFLGQRLGLPVELVDPVEGLGLEVP
DTLYLPNRADVGVVLGLATRGV

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=844444 VZG28_RS09205 WP_338441047.1 1851187..1852215(+) (pilM) [Synechococcus elongatus IITB4]
GTGGAGATCACCCCAGAGCGGATCAACCTTGCCCATATCGGCCGCAAGGGGAACCGGTTGCTGCTGCAGGATTTTGTTTC
GGTCGACTTGCCCGATGGTTTGTTCCAAGACGGGCGAGTCATTGACAGCTTTAGCTTGTCCGATTTACTCCGCACTGCTA
TCAGTGACAACCGCATTAAAACCAAAAAGGTTTCTACGGCAGTCCCCGGGCGTGAGGTGATCACGCGGCTGCTGCCGATG
CCAGCTGAGCTGGATGATGCGGAGTTGCACGAGACATTGCTCAATCAAGAAGCAGCGCTGTTTCTGCCCTTCCCCCGTGA
AGAAGCTGATATTGACTACCTCAAACTGGATTACTTCCTCGATATTGATGAGGTCGAAAAGCTGCATGTCTTGCTGGTGG
CGACCCGGCGACAAGTTACCGACACCTATCTCGATCTCTTTGCCCAAGCGGGTCTAACGCCCGACATCGTGGAAGTTGGG
AGCTTCGCACTCATTCGCACCATTCGCGAATCCCTGCGGCAGTACGGTCTTCAAGAAGCCGTCATCCTCCTTAATATCGA
ATATGACCTCACCGAGATTGTGATCATCGTTGGCGGGGTGCCTCGCTTCAGCCGCACAATCGCCATGGGAACCCAGCAAT
GGCAACGCGCGGCCGCCCAAGCAGGTCTTGAAAATATCGGCCGCGGCCTTGATTTTCTACAAGGACAAGCACTCTCGCTA
CTCGAGCCGCCAGCCGATCTCCTCTCGCAAGGTCTAGTGCGATCGGCGGCTGATCTCTGCGACGAAGTGCGGCGATCGGC
AGACTTCTATCTCAGTCAAGAAAGTGATATTGAAGTCGCCAAGCTCTACGTAGCCGGCCCCGGTTCTGCCTTGCCAACTT
TGCCTGAGTTCTTAGGGCAACGCCTGGGTCTGCCGGTGGAGCTCGTTGATCCGGTGGAAGGACTGGGGCTGGAAGTGCCC
GACACGCTCTACTTGCCCAACCGTGCTGACGTGGGTGTGGTACTTGGTTTGGCCACGCGAGGAGTGTAG

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(3-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

46.857

100

0.48