Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QLQ02_RS10095 Genome accession   NZ_CP127833
Coordinates   1997692..1999086 (+) Length   464 a.a.
NCBI ID   WP_286059609.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1992692..2004086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS10070 - 1992852..1993844 (-) 993 WP_286059602.1 LCP family protein -
  QLQ02_RS10075 - 1993859..1994497 (-) 639 WP_286059604.1 YigZ family protein -
  QLQ02_RS10080 degS 1994714..1995871 (+) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  QLQ02_RS10085 degU 1995954..1996643 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLQ02_RS10090 - 1996740..1997585 (+) 846 WP_286059607.1 DegV family protein -
  QLQ02_RS10095 comFA 1997692..1999086 (+) 1395 WP_286059609.1 ATP-dependent helicase ComFA Machinery gene
  QLQ02_RS10100 - 1999143..1999439 (+) 297 WP_010332068.1 competence protein ComFB -
  QLQ02_RS10105 comFC 1999403..2000125 (+) 723 WP_286059612.1 double zinc ribbon domain-containing protein Machinery gene
  QLQ02_RS10110 - 2000199..2000618 (+) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  QLQ02_RS10115 flgM 2000699..2000965 (+) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLQ02_RS10120 flgN 2000981..2001463 (+) 483 WP_286059616.1 flagellar protein FlgN -
  QLQ02_RS10125 flgK 2001482..2003005 (+) 1524 WP_286059618.1 flagellar hook-associated protein FlgK -
  QLQ02_RS10130 flgL 2003015..2003911 (+) 897 WP_010332062.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52935.94 Da        Isoelectric Point: 9.9475

>NTDB_id=844444 QLQ02_RS10095 WP_286059609.1 1997692..1999086(+) (comFA) [Bacillus mojavensis strain KRS009]
MQTKTSESNSLFSKELQQQLQSRHLLRTEISFSDEIIDWHTEHGYISAEESLSKNKRGYRCNRCGQNDQQYFSSYHSFGK
DKVYCRSCVMMGRVSEDVSLYSWSKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQDELLIWAVCGAGKTELLFPG
IELALNLKQRVCIATPRTDVVLELAPRLKAAFRGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLNRNKIPNSVK
RWIEQHVKEGRPVFLFVPSISILEKAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQAG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=844444 QLQ02_RS10095 WP_286059609.1 1997692..1999086(+) (comFA) [Bacillus mojavensis strain KRS009]
ATGCAGACTAAGACATCAGAATCGAACAGTCTATTCTCTAAAGAACTGCAGCAGCAGCTCCAGAGCCGTCATCTGCTTAG
AACAGAAATCTCATTTTCTGACGAGATCATTGATTGGCATACTGAGCATGGTTATATATCTGCCGAGGAGTCATTATCAA
AAAATAAACGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCATCGTATCATTCATTTGGAAAA
GATAAGGTTTACTGCCGCTCTTGTGTCATGATGGGCAGGGTGAGTGAGGATGTTTCTTTGTATTCTTGGAGTAAGGAGGC
GGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGATGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATCTAAAACAGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
GCTTAAGGCTGCATTTCGAGGTGCTGATATTTCAGCTTTATACGGAGGAAGTGAGGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATAGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTCCAAAAAGCGAGAAAGAAAAACAGCACGCTTGTTTATCTAAGCGCCAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGGGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCACCGGAAGC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAAACCGAAATAAAATTCCAAATTCGGTAAAA
AGATGGATAGAGCAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCGTCCATTTCTATTCTGGAAAAGGCTGC
TTCTTGCTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTAGAAAGGGGTGTCACAGTTCCTATGGTCCAAGCAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGCCGGCATAAAGAACA
TGCAGACGGTGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATCAAAATAATGA
ATGAATTGGCTTTGAAAAATAAGTTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(325-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.498

98.707

0.834