Detailed information NTG0844442

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: VZG28_RS08965
• Genome accession: NZ_CP143853
• Coordinates: 1803605..1804327 (-)
• Length: 240 a.a.
• NCBI ID: WP_338441017.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB4
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1798605..1809327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG28_RS08940 (VZG28_08940)	rpsB	1799180..1799935 (-)	756	WP_208675740.1	30S ribosomal protein S2	-
VZG28_RS08945 (VZG28_08945)	-	1800317..1800601 (+)	285	WP_208675738.1	DUF4278 domain-containing protein	-
VZG28_RS08950 (VZG28_08950)	-	1800697..1801383 (-)	687	WP_338441015.1	lecithin retinol acyltransferase family protein	-
VZG28_RS08955 (VZG28_08955)	-	1801407..1802249 (-)	843	WP_338441016.1	alpha/beta hydrolase	-
VZG28_RS08960 (VZG28_08960)	clpX	1802246..1803592 (-)	1347	WP_208675732.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
VZG28_RS08965 (VZG28_08965)	clpP	1803605..1804327 (-)	723	WP_338441017.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
VZG28_RS08970 (VZG28_08970)	tig	1804419..1805843 (-)	1425	WP_338429460.1	trigger factor	-
VZG28_RS08975 (VZG28_08975)	-	1805834..1805998 (-)	165	WP_338437756.1	hypothetical protein	-
VZG28_RS08980 (VZG28_08980)	-	1806111..1807037 (+)	927	WP_338442750.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	-
VZG28_RS08985 (VZG28_08985)	-	1807097..1808425 (+)	1329	WP_338441018.1	PhoH family protein	-
VZG28_RS08990 (VZG28_08990)	-	1808434..1809153 (+)	720	WP_208678640.1	LOG family protein	-

Sequence

Protein

• Length: 240 a.a.
• Molecular weight: 25933.47 Da
• Isoelectric Point: 4.5761

>NTDB_id=844442 VZG28_RS08965 WP_338441017.1 1803605..1804327(-) (clpP) [Synechococcus elongatus IITB4]
MFSSQASLPIHSRRLSAGLDSQWQQPQIQAIAGSQAIVPTVVEQSGRGERAFDIYSRLLRERIVFLGTGVDDAVADSIVA
QLLFLEAEDPEKDIQLYINSPGGSVTAGMAIYDTMQQVAPDVATICFGLAASMGAFLLSGGAKGKRMALPSARIMIHQPL
GGAQGQAVDIEIQAREILYHKSTLNDLLAQHTGQPLEKIEVDTDRDFFMSPEEAKAYGLIDQVLTRPTVAITDHNDAVLQ

Nucleotide

• Length: 723 bp

>NTDB_id=844442 VZG28_RS08965 WP_338441017.1 1803605..1804327(-) (clpP) [Synechococcus elongatus IITB4]
ATGTTTTCGTCCCAAGCTTCTCTGCCCATTCACAGTCGACGACTGAGCGCTGGTCTCGACAGCCAGTGGCAGCAGCCGCA
GATTCAAGCGATCGCAGGCTCCCAGGCTATTGTGCCGACGGTGGTGGAGCAATCAGGACGAGGCGAACGCGCGTTCGATA
TCTATTCCCGCCTATTGCGCGAACGGATTGTCTTCTTGGGGACAGGCGTTGATGATGCGGTTGCCGACTCGATCGTGGCG
CAGCTGCTTTTCCTAGAAGCCGAAGATCCGGAAAAAGATATTCAGCTCTACATCAACTCCCCCGGTGGTTCAGTGACCGC
TGGCATGGCGATCTACGACACGATGCAACAGGTCGCGCCAGATGTTGCCACTATCTGCTTTGGTTTGGCAGCCAGCATGG
GCGCTTTCTTGCTGTCGGGTGGAGCCAAAGGTAAGCGGATGGCTTTGCCTAGCGCCCGCATCATGATCCACCAACCGCTG
GGCGGCGCTCAGGGTCAAGCCGTGGATATTGAAATCCAAGCCCGTGAGATCCTGTACCACAAGAGCACGCTCAACGACCT
GTTAGCGCAGCATACGGGGCAGCCGCTTGAGAAGATTGAAGTCGATACTGATCGCGACTTTTTTATGTCGCCCGAGGAAG
CCAAGGCCTACGGATTAATTGATCAGGTACTTACACGACCAACCGTGGCCATCACCGACCATAATGATGCTGTTCTCCAG
TAG

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (47-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	69.312	78.75	0.546
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.725	78.75	0.533
clpP	Lactococcus lactis subsp. cremoris KW2	51.795	81.25	0.421
clpP	Streptococcus thermophilus LMG 18311	51.042	80	0.408
clpP	Streptococcus thermophilus LMD-9	51.042	80	0.408
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.744	81.25	0.404
clpP	Streptococcus pneumoniae Rx1	49.744	81.25	0.404
clpP	Streptococcus pneumoniae D39	49.744	81.25	0.404
clpP	Streptococcus pneumoniae R6	49.744	81.25	0.404
clpP	Streptococcus pneumoniae TIGR4	49.744	81.25	0.404
clpP	Streptococcus pyogenes MGAS315	50.526	79.167	0.4
clpP	Streptococcus pyogenes JRS4	50.526	79.167	0.4
clpP	Streptococcus mutans UA159	49.738	79.583	0.396