Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QLQ02_RS10085 Genome accession   NZ_CP127833
Coordinates   1995954..1996643 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus mojavensis strain KRS009     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990954..2001643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS10060 - 1991162..1991620 (-) 459 WP_286059598.1 hypothetical protein -
  QLQ02_RS10065 - 1991657..1992112 (-) 456 WP_286059600.1 hypothetical protein -
  QLQ02_RS10070 - 1992852..1993844 (-) 993 WP_286059602.1 LCP family protein -
  QLQ02_RS10075 - 1993859..1994497 (-) 639 WP_286059604.1 YigZ family protein -
  QLQ02_RS10080 degS 1994714..1995871 (+) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  QLQ02_RS10085 degU 1995954..1996643 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QLQ02_RS10090 - 1996740..1997585 (+) 846 WP_286059607.1 DegV family protein -
  QLQ02_RS10095 comFA 1997692..1999086 (+) 1395 WP_286059609.1 ATP-dependent helicase ComFA Machinery gene
  QLQ02_RS10100 - 1999143..1999439 (+) 297 WP_010332068.1 competence protein ComFB -
  QLQ02_RS10105 comFC 1999403..2000125 (+) 723 WP_286059612.1 double zinc ribbon domain-containing protein Machinery gene
  QLQ02_RS10110 - 2000199..2000618 (+) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  QLQ02_RS10115 flgM 2000699..2000965 (+) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  QLQ02_RS10120 flgN 2000981..2001463 (+) 483 WP_286059616.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=844443 QLQ02_RS10085 WP_003219701.1 1995954..1996643(+) (degU) [Bacillus mojavensis strain KRS009]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=844443 QLQ02_RS10085 WP_003219701.1 1995954..1996643(+) (degU) [Bacillus mojavensis strain KRS009]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTGAAGCGGATATTGGATTTCGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCGATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGGGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTGATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1