Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   VZG28_RS08960 Genome accession   NZ_CP143853
Coordinates   1802246..1803592 (-) Length   448 a.a.
NCBI ID   WP_208675732.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797246..1808592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS08930 (VZG28_08930) - 1797429..1798328 (+) 900 WP_338441014.1 alpha/beta fold hydrolase -
  VZG28_RS08935 (VZG28_08935) tsf 1798412..1799077 (-) 666 WP_208678645.1 translation elongation factor Ts -
  VZG28_RS08940 (VZG28_08940) rpsB 1799180..1799935 (-) 756 WP_208675740.1 30S ribosomal protein S2 -
  VZG28_RS08945 (VZG28_08945) - 1800317..1800601 (+) 285 WP_208675738.1 DUF4278 domain-containing protein -
  VZG28_RS08950 (VZG28_08950) - 1800697..1801383 (-) 687 WP_338441015.1 lecithin retinol acyltransferase family protein -
  VZG28_RS08955 (VZG28_08955) - 1801407..1802249 (-) 843 WP_338441016.1 alpha/beta hydrolase -
  VZG28_RS08960 (VZG28_08960) clpX 1802246..1803592 (-) 1347 WP_208675732.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  VZG28_RS08965 (VZG28_08965) clpP 1803605..1804327 (-) 723 WP_338441017.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  VZG28_RS08970 (VZG28_08970) tig 1804419..1805843 (-) 1425 WP_338429460.1 trigger factor -
  VZG28_RS08975 (VZG28_08975) - 1805834..1805998 (-) 165 WP_338437756.1 hypothetical protein -
  VZG28_RS08980 (VZG28_08980) - 1806111..1807037 (+) 927 WP_338442750.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  VZG28_RS08985 (VZG28_08985) - 1807097..1808425 (+) 1329 WP_338441018.1 PhoH family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49683.09 Da        Isoelectric Point: 5.6571

>NTDB_id=844441 VZG28_RS08960 WP_208675732.1 1802246..1803592(-) (clpX) [Synechococcus elongatus IITB4]
MSRYDSHLKCSFCGKSQEQVRKLIAGPGVYICDECVDLCNEILDEELFDGNANPAPPPGGVKPAAAAASHQGPRKPKRSL
TLSQIPKPHDIKRYLDHHVIGQNEAKKMLSVAVYNHYKRLAYQQSAEEAGETIEIQKSNILLIGPTGCGKTLLAQTLAKL
LDVPFAVADATTLTEAGYVGEDVENILLRLLQVADLDIEEAQRGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKML
EGTIANVPPQGGRKHPYQDCIQIDTRNILFICGGAFVGLEKLVDRRLGKKSIGFVHPEETKTKEQRAAAILRHMEPEDLV
QFGLIPEFIGRMPVTAVLDPLDEVALTEILTEPRDALVKQYQKLMHMDSVELEFRQDAIEAIAREAFRRKTGARALRGIV
EEIMLEVMYELPSRQDVTHCTITREMVEKRSSADVLLHPSSLPTPESA

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=844441 VZG28_RS08960 WP_208675732.1 1802246..1803592(-) (clpX) [Synechococcus elongatus IITB4]
ATGTCGAGATACGACTCTCACCTGAAGTGCTCTTTTTGCGGGAAATCCCAAGAGCAGGTACGTAAGCTCATCGCCGGACC
TGGAGTTTACATTTGTGATGAATGCGTCGACCTCTGTAACGAGATCCTCGACGAAGAATTATTTGACGGCAATGCCAATC
CTGCACCACCGCCAGGTGGCGTCAAACCCGCGGCTGCAGCTGCGAGTCATCAAGGACCTCGCAAACCGAAGCGATCGCTA
ACGCTGTCGCAAATTCCCAAGCCCCACGACATCAAACGCTATCTTGACCATCACGTCATTGGTCAAAACGAAGCCAAGAA
AATGTTGTCTGTGGCGGTTTATAACCACTACAAACGCTTGGCTTATCAGCAGTCAGCTGAAGAAGCAGGCGAAACAATTG
AAATTCAGAAATCCAATATTCTGCTGATTGGTCCAACCGGCTGTGGCAAGACTCTGCTTGCTCAGACGTTAGCCAAATTG
CTGGATGTACCCTTCGCAGTTGCCGACGCAACAACACTGACGGAAGCCGGCTATGTCGGTGAAGACGTCGAAAACATTCT
GCTGCGGCTCCTGCAAGTGGCTGATCTCGACATCGAGGAAGCTCAACGCGGCATCATCTACATCGATGAAATCGACAAGA
TTGCACGCAAGAGCGAAAATCCTTCGATCACGCGTGACGTCTCCGGGGAAGGCGTCCAGCAGGCTTTGCTGAAGATGCTG
GAAGGCACCATCGCCAATGTCCCCCCCCAAGGCGGTCGCAAGCATCCCTATCAGGACTGCATCCAAATCGACACGCGCAA
CATCCTGTTTATCTGCGGTGGTGCCTTTGTCGGTCTGGAAAAACTCGTCGATCGCCGCTTGGGCAAAAAATCGATTGGCT
TTGTCCACCCTGAAGAGACCAAAACCAAGGAACAGCGGGCGGCTGCCATCCTGCGCCACATGGAACCCGAAGATTTGGTG
CAGTTTGGTCTGATTCCTGAATTTATCGGTCGGATGCCGGTGACGGCGGTGTTGGATCCGCTAGACGAAGTGGCGCTGAC
GGAAATCCTGACGGAACCTCGGGACGCGCTGGTCAAGCAGTATCAGAAGCTGATGCACATGGACAGCGTCGAGCTGGAAT
TCCGCCAAGATGCGATCGAAGCAATCGCCCGCGAAGCCTTCCGTCGCAAGACCGGAGCTCGGGCACTGCGCGGCATCGTA
GAAGAGATCATGCTGGAAGTGATGTACGAGCTGCCGTCTCGCCAGGACGTCACTCACTGCACGATCACGCGGGAGATGGT
TGAGAAGCGCTCCAGTGCGGATGTGCTCTTGCATCCTTCGAGTTTGCCGACACCGGAATCTGCTTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(341-419)

AAA domain (Cdc48 subfamily) (AAA_2)

(136-334)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.84

94.643

0.538
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.804

95.536

0.504