Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VZG28_RS06085 Genome accession   NZ_CP143853
Coordinates   1234182..1234544 (-) Length   120 a.a.
NCBI ID   WP_208676635.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229182..1239544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS06080 (VZG28_06080) - 1233650..1234156 (-) 507 WP_208678991.1 chemotaxis protein CheW -
  VZG28_RS06085 (VZG28_06085) pilH 1234182..1234544 (-) 363 WP_208676635.1 response regulator Machinery gene
  VZG28_RS06090 (VZG28_06090) - 1234597..1235787 (-) 1191 WP_338442507.1 response regulator -
  VZG28_RS06095 (VZG28_06095) - 1236413..1237159 (+) 747 WP_338442508.1 response regulator transcription factor -
  VZG28_RS06100 (VZG28_06100) - 1237172..1238413 (+) 1242 WP_338442510.1 ATP-binding protein -
  VZG28_RS06105 (VZG28_06105) - 1238428..1239159 (+) 732 WP_208676627.1 pseudouridine synthase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13190.15 Da        Isoelectric Point: 4.5271

>NTDB_id=844429 VZG28_RS06085 WP_208676635.1 1234182..1234544(-) (pilH) [Synechococcus elongatus IITB4]
MSTVLVVEDTASEMELITTYLQASGYTVIGANNAQDALSKVDLYKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPVIV
CSSKNQEIDRLWAMKQGADAYVTKPFKQEDLVKAVRSVDS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=844429 VZG28_RS06085 WP_208676635.1 1234182..1234544(-) (pilH) [Synechococcus elongatus IITB4]
ATGAGCACAGTGCTGGTTGTTGAAGATACGGCTTCTGAAATGGAGCTGATTACCACTTACCTACAGGCCAGTGGCTACAC
CGTGATTGGGGCGAATAACGCCCAAGATGCTTTAAGTAAAGTGGATTTATACAAACCAGATGTCGTGGTCACGGATGTGG
TGATGCCTGGCATGAGTGGTTTTGAACTCTGCCGCAGCCTGAAGAAAAATCCTGAGACTGAAAAACTGCCGGTGATTGTC
TGCAGTTCCAAAAATCAGGAAATCGATCGGTTGTGGGCGATGAAGCAGGGAGCCGATGCTTACGTAACCAAGCCTTTTAA
ACAAGAGGATTTGGTGAAAGCTGTTCGTTCTGTTGACTCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.61

98.333

0.458
  letA Legionella pneumophila str. Paris

35.484

100

0.367
  letA Legionella pneumophila strain ERS1305867

35.484

100

0.367