Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   VZF83_RS12015 Genome accession   NZ_CP143849
Coordinates   2412335..2414335 (-) Length   666 a.a.
NCBI ID   WP_338430040.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2407335..2419335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZF83_RS11985 (VZF83_11985) - 2408177..2408368 (+) 192 WP_338430035.1 hypothetical protein -
  VZF83_RS11990 (VZF83_11990) - 2408445..2409059 (+) 615 WP_338430036.1 CPP1-like family protein -
  VZF83_RS11995 (VZF83_11995) hslO 2409111..2410004 (-) 894 WP_208674579.1 Hsp33 family molecular chaperone HslO -
  VZF83_RS12000 (VZF83_12000) - 2410039..2410743 (-) 705 WP_338430037.1 ABC transporter ATP-binding protein -
  VZF83_RS12005 (VZF83_12005) - 2410819..2411814 (+) 996 WP_338430038.1 Sll0314/Alr1548 family TPR repeat-containing protein -
  VZF83_RS12010 (VZF83_12010) - 2411818..2412273 (+) 456 WP_338430039.1 DUF3531 family protein -
  VZF83_RS12015 (VZF83_12015) uvrB 2412335..2414335 (-) 2001 WP_338430040.1 excinuclease ABC subunit UvrB Machinery gene
  VZF83_RS12020 (VZF83_12020) - 2414457..2415170 (+) 714 WP_208678124.1 DevA family ABC transporter ATP-binding protein -
  VZF83_RS12025 (VZF83_12025) - 2415273..2415935 (+) 663 WP_208674571.1 FHA domain-containing protein -
  VZF83_RS12030 (VZF83_12030) - 2415941..2416702 (+) 762 WP_338430041.1 HAD family hydrolase -
  VZF83_RS12035 (VZF83_12035) - 2416699..2418054 (-) 1356 WP_338430043.1 FAD-binding oxidoreductase -

Sequence

Protein


Download         Length: 666 a.a.        Molecular weight: 76034.35 Da        Isoelectric Point: 4.9454

>NTDB_id=844405 VZF83_RS12015 WP_338430040.1 2412335..2414335(-) (uvrB) [Synechococcus elongatus IITB3]
MTPFQLQARYQPMGDQPTAIAQLVQKVQAGIPYQTLLGATGTGKTFTIANVIEQVGRPALVLAHNKTLAAQLCNELREFF
PNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDMLRHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPL
EVGAEVNMREVLRQLVDVQYNRNDLESGRGRFRVKGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRLN
IYPARHFVTPEERLETAIAEIKAELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYCNGVENYARHLAGREPGSPP
ECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLIDHGFRLPSAADNRPLKSEEFWDKVRQCIFVSATPGDWEVG
QSETHIVEQVIRPTGVVDPEVFVRSTEGQVDDLLTEIQQRVSRQERALITTLTKRMAEDLTDYLGDRGVKVRYLHSEINS
IERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAARHINGQAILYADRLTESME
KAIGETERRRRIQLEYNQRHQITPQPISKRSSNAILSFLEVSRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAA
KNLEFEEAAQYRDRIKKLRERLVGRH

Nucleotide


Download         Length: 2001 bp        

>NTDB_id=844405 VZF83_RS12015 WP_338430040.1 2412335..2414335(-) (uvrB) [Synechococcus elongatus IITB3]
ATGACGCCCTTTCAACTGCAAGCCCGCTATCAACCAATGGGAGATCAGCCCACTGCGATCGCGCAGTTGGTGCAGAAAGT
TCAGGCAGGGATTCCCTATCAAACGTTGCTGGGTGCAACCGGAACTGGCAAGACTTTTACGATCGCTAATGTGATTGAAC
AGGTGGGGCGACCCGCGCTAGTTCTCGCTCACAATAAAACGTTGGCGGCGCAGCTTTGTAATGAGCTACGCGAGTTTTTT
CCGAATAATGCAGTTGAGTATTTCATCAGCTATTACGACTACTATCAGCCCGAAGCCTACATCCCCGTCACCGATACTTA
CATCGCCAAAACAGCGTCGATCAACGAAGAGATCGATATGTTGCGGCACTCCGCCACTCGCAACCTCTTTGAGCGGCGAG
ATGTGATTGTTGTTGCCTCTATTAGCTGCATCTATGGCCTCGGCATCCCCAGTGAATATTTGAAGGCAGCCATCCCCCTA
GAAGTCGGGGCTGAAGTCAATATGCGCGAGGTGCTACGCCAACTCGTCGATGTCCAATACAATCGCAACGACCTAGAGTC
AGGTCGGGGGCGGTTTCGGGTCAAGGGCGATGTTCTGGAAATTGGCCCTGCCTACGAAGATCGGATTATTCGAGTTGAGT
TCTTTGGCGATGAAATCGATGCCATTCGCTACATCGATCCCGTGACTGGTGAAATTCTCCAAAGCCTCGATCGCCTCAAC
ATCTATCCGGCCCGTCACTTTGTCACCCCTGAGGAGCGACTGGAAACCGCGATCGCCGAGATTAAAGCGGAGCTCAATCA
ACAGCTGCTGACCTTACAAGCCGAAGGCAAGCTGGTCGAAGCCCAACGCTTGGAGCAACGCACCCGCTATGACCTCGAAA
TGCTGCAGGAAGTTGGCTACTGCAACGGCGTGGAAAACTATGCCAGACACCTCGCGGGCCGTGAACCAGGATCACCGCCG
GAATGTTTAATTGACTATTTCCCCAAAGACTGGCTCTTGGTGGTTGATGAATCCCACGTGACGGTGCCCCAGCTACGCGG
GATGTACAACGGCGATCAATCCCGCAAAAAAGTGTTGATTGATCATGGCTTTCGACTACCTAGCGCAGCGGATAACCGCC
CTTTGAAGTCGGAGGAGTTTTGGGACAAAGTGCGGCAGTGCATTTTTGTCTCAGCCACGCCCGGCGATTGGGAAGTGGGG
CAATCGGAAACCCATATTGTCGAACAAGTCATCCGACCAACAGGGGTAGTTGATCCTGAGGTTTTTGTCCGATCCACAGA
AGGCCAAGTCGATGATTTACTGACAGAAATTCAGCAGCGGGTCAGCCGTCAAGAGCGGGCTCTGATTACAACACTAACCA
AACGGATGGCCGAGGACTTAACTGATTATTTGGGCGATCGCGGTGTTAAAGTTCGCTATCTTCACTCCGAGATCAATTCG
ATCGAACGGATTGAAATCCTTCAAGATCTGCGCAACGGCGATTTTGATGTCTTGATTGGTGTCAATTTACTGCGGGAAGG
ATTAGATTTACCTGAAGTCTCTTTGGTCGCAATCCTTGATGCTGACAAAGAGGGCTTTTTGCGGACTGAGCGCAGCTTAA
TTCAAACGATCGGTCGTGCGGCTCGCCACATCAACGGCCAGGCAATTCTCTATGCCGATCGCCTGACCGAAAGCATGGAA
AAAGCGATCGGCGAAACCGAGCGACGGCGACGCATCCAACTGGAATACAATCAACGTCATCAGATTACTCCTCAGCCGAT
CAGCAAGCGATCGAGTAATGCCATTCTGTCGTTCCTCGAAGTCTCGCGGCGTCTGAACAAGCAAGAACTAGAAGTCGCAG
TCAGTCAAGCGGATGATCTTTCCTTGGAGGAAATTCCGAATCTGATTACTCAGCTAGAAGCACAAATGAAAGAAGCCGCC
AAAAATCTTGAATTTGAAGAGGCAGCCCAATATCGCGATCGCATCAAAAAGCTGCGTGAGCGACTCGTCGGTCGTCACTG
A

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-247)

Helicase conserved C-terminal domain (Helicase_C)

(434-542)

UvrB/uvrC motif (UVR)

(627-660)

Ultra-violet resistance protein B (UvrB)

(550-590)

Type III restriction enzyme, res subunit (ResIII)

(15-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.815

98.799

0.581
  uvrB Streptococcus pneumoniae R6

58.815

98.799

0.581
  uvrB Streptococcus pneumoniae D39

58.815

98.799

0.581