Detailed information NTG0844069

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QP436_RS08510
• Genome accession: NZ_CP127404
• Coordinates: 1914399..1915772 (+)
• Length: 457 a.a.
• NCBI ID: WP_100553378.1
• Uniprot ID: A0AAW4GGG9
• Organism: Stenotrophomonas sp. As-6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1909399..1920772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP436_RS08495	sucD	1910287..1911162 (-)	876	WP_205406019.1	succinate--CoA ligase subunit alpha	-
QP436_RS08500	sucC	1911184..1912353 (-)	1170	WP_025874298.1	ADP-forming succinate--CoA ligase subunit beta	-
QP436_RS08505	-	1912731..1914344 (+)	1614	WP_100553377.1	ATP-binding protein	-
QP436_RS08510	pilR	1914399..1915772 (+)	1374	WP_100553378.1	sigma-54 dependent transcriptional regulator	Regulator
QP436_RS08515	pilB	1915839..1917566 (-)	1728	WP_205406020.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QP436_RS08520	comP	1917680..1918090 (-)	411	WP_100553380.1	pilin	Machinery gene
QP436_RS08525	-	1918184..1919080 (-)	897	WP_205406021.1	serine hydrolase domain-containing protein	-
QP436_RS08530	-	1919101..1920213 (-)	1113	WP_205406022.1	isoprenylcysteine carboxylmethyltransferase family protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49668.97 Da
• Isoelectric Point: 6.6449

>NTDB_id=844069 QP436_RS08510 WP_100553378.1 1914399..1915772(+) (pilR) [Stenotrophomonas sp. As-6]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATISKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRATPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHAEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=844069 QP436_RS08510 WP_100553378.1 1914399..1915772(+) (pilR) [Stenotrophomonas sp. As-6]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTAGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGTGAGATCGCCCAGCACTACCCACGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCAGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACAGCGAACGCCCCGTTGCCGGACCCGCCG
CGGAACAAGCCGCGCGCCTGCTCGGCGAATCGCCGGCCATGGACGTGCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAATCCGGCGTAGGCAAGGAACTGGTCGCACGCACCATCCACGCACAGGGTGCACG
CGCGGCCGGGCCATTCGTGCCGGTCAACTGTGGCGCCATCCCCACCGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGTGCCCACGCCGACAAGCCGGGGCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGTGCGGTTGGCGCGCC
CAGCGAAGAACCGGTAGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAAGACGGGCGTTTCC
GCCACGACCTGTACTACCGCATCAACGTAATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCGGCG
CTGGCCGCGTCGATCCTGGCACGGCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCCGCTCTGGACGC
ACTGGCGCAGTACGGCTTCCCCGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCGCTGGCGCTGGCGGAAGAAG
ACCGTATCGGTGCAGACGACCTGCGCCTGCCGCAGCACGCGCCACGCTCACCGGGCAGTGCTGCCCATGCCGAAGCCGTG
GTCGACCTGCACCCGGGCAGTGCCGCCCTGCCCTCGTACATCGAGCAGCTTGAGCGCAGTGCGATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGCGCACTGCGTTACAAGCTGAAGAAGC
TGGGGATGGAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.377	99.781	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49