Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRX44_RS05740 Genome accession   NZ_CP127337
Coordinates   875458..875970 (-) Length   170 a.a.
NCBI ID   WP_002288368.1    Uniprot ID   -
Organism   Enterococcus faecium strain E4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 870458..880970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX44_RS05720 (QRX44_05660) dnaB 870981..872348 (-) 1368 WP_002288373.1 replicative DNA helicase -
  QRX44_RS05725 (QRX44_05665) rplI 872622..873074 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  QRX44_RS05730 (QRX44_05670) - 873080..875053 (-) 1974 WP_002288371.1 DHH family phosphoesterase -
  QRX44_RS05735 (QRX44_05675) rpsR 875196..875432 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  QRX44_RS05740 (QRX44_05680) ssb 875458..875970 (-) 513 WP_002288368.1 single-stranded DNA-binding protein Machinery gene
  QRX44_RS05745 (QRX44_05685) rpsF 876020..876319 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  QRX44_RS05750 (QRX44_05690) gyrA 876555..879026 (-) 2472 WP_002321575.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18451.99 Da        Isoelectric Point: 4.6742

>NTDB_id=843511 QRX44_RS05740 WP_002288368.1 875458..875970(-) (ssb) [Enterococcus faecium strain E4]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=843511 QRX44_RS05740 WP_002288368.1 875458..875970(-) (ssb) [Enterococcus faecium strain E4]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTTTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.322

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

62.353

0.388