Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QRA07_RS16585 Genome accession   NZ_CP127321
Coordinates   3482408..3482812 (-) Length   134 a.a.
NCBI ID   WP_063098124.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477408..3487812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS16555 (QRA07_16600) - 3477492..3477761 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  QRA07_RS16560 (QRA07_16605) rapZ 3477758..3478609 (-) 852 WP_002117179.1 RNase adapter RapZ -
  QRA07_RS16565 (QRA07_16610) panC 3478633..3479481 (-) 849 WP_002117191.1 pantoate--beta-alanine ligase -
  QRA07_RS16570 (QRA07_16615) panB 3479485..3480294 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  QRA07_RS16575 (QRA07_16620) folK 3480340..3480822 (-) 483 WP_014208398.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  QRA07_RS16580 (QRA07_16625) pcnB 3480819..3482282 (-) 1464 WP_002117192.1 polynucleotide adenylyltransferase PcnB -
  QRA07_RS16585 (QRA07_16630) comEA 3482408..3482812 (-) 405 WP_063098124.1 ComEA family DNA-binding protein Machinery gene
  QRA07_RS16590 (QRA07_16635) mazG 3482781..3483587 (-) 807 WP_233734472.1 nucleoside triphosphate pyrophosphohydrolase -
  QRA07_RS16595 (QRA07_16640) - 3483700..3484473 (+) 774 WP_233734460.1 SDR family oxidoreductase -
  QRA07_RS16600 (QRA07_16645) relA 3484520..3486826 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15521.85 Da        Isoelectric Point: 10.6823

>NTDB_id=843418 QRA07_RS16585 WP_063098124.1 3482408..3482812(-) (comEA) [Acinetobacter pittii strain PC870]
MQFSMNLWKNKHNIFIILFWSLISSTLVQAQSFDQNFKEWKAKQQRYDQKLSMQRSAHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKMRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=843418 QRA07_RS16585 WP_063098124.1 3482408..3482812(-) (comEA) [Acinetobacter pittii strain PC870]
ATGCAGTTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTATTTTATTTTGGAGCCTGATCTCATCGACGCT
AGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCGCTCCGCTCATTCTAATAGCCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAATGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAATGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403