Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   QRA07_RS02635 Genome accession   NZ_CP127321
Coordinates   557110..557592 (+) Length   160 a.a.
NCBI ID   WP_017400484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552110..562592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02625 (QRA07_02620) pilX 552433..553242 (+) 810 WP_017400486.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QRA07_RS02630 (QRA07_02625) pilY1 553254..557099 (+) 3846 WP_233734043.1 PilC/PilY family type IV pilus protein Machinery gene
  QRA07_RS02635 (QRA07_02630) pilY2 557110..557592 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  QRA07_RS02640 (QRA07_02635) pilE 557589..558014 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  QRA07_RS02645 (QRA07_02640) rpsP 558162..558413 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QRA07_RS02650 (QRA07_02645) rimM 558433..558981 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  QRA07_RS02655 (QRA07_02650) trmD 559024..559779 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QRA07_RS02660 (QRA07_02655) rplS 559999..560367 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  QRA07_RS02665 (QRA07_02660) lip 560420..561361 (-) 942 WP_014207808.1 alpha/beta fold hydrolase -
  QRA07_RS02670 (QRA07_02665) - 561477..562508 (-) 1032 WP_233734045.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17505.79 Da        Isoelectric Point: 8.4721

>NTDB_id=843400 QRA07_RS02635 WP_017400484.1 557110..557592(+) (pilY2) [Acinetobacter pittii strain PC870]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=843400 QRA07_RS02635 WP_017400484.1 557110..557592(+) (pilY2) [Acinetobacter pittii strain PC870]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

41.279

100

0.444