Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   QRA07_RS02630 Genome accession   NZ_CP127321
Coordinates   553254..557099 (+) Length   1281 a.a.
NCBI ID   WP_233734043.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 548254..562099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS02600 (QRA07_02595) gmk 548536..549165 (-) 630 WP_233734036.1 guanylate kinase -
  QRA07_RS02605 (QRA07_02600) ispH 549288..550238 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QRA07_RS02610 (QRA07_02605) fimU 550408..550881 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  QRA07_RS02615 (QRA07_02610) pilV 550875..551435 (+) 561 WP_233734037.1 type IV pilus modification protein PilV Machinery gene
  QRA07_RS02620 (QRA07_02615) pilW 551435..552436 (+) 1002 WP_233734041.1 PilW family protein Machinery gene
  QRA07_RS02625 (QRA07_02620) pilX 552433..553242 (+) 810 WP_017400486.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QRA07_RS02630 (QRA07_02625) pilY1 553254..557099 (+) 3846 WP_233734043.1 PilC/PilY family type IV pilus protein Machinery gene
  QRA07_RS02635 (QRA07_02630) pilY2 557110..557592 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  QRA07_RS02640 (QRA07_02635) pilE 557589..558014 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  QRA07_RS02645 (QRA07_02640) rpsP 558162..558413 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  QRA07_RS02650 (QRA07_02645) rimM 558433..558981 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  QRA07_RS02655 (QRA07_02650) trmD 559024..559779 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QRA07_RS02660 (QRA07_02655) rplS 559999..560367 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  QRA07_RS02665 (QRA07_02660) lip 560420..561361 (-) 942 WP_014207808.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 137585.13 Da        Isoelectric Point: 7.8739

>NTDB_id=843399 QRA07_RS02630 WP_233734043.1 553254..557099(+) (pilY1) [Acinetobacter pittii strain PC870]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSADGDSRSGQILVAAAPLGDASTFNTVGSQRYKLKQAVASLTANGYTPSAHAYAEAAAYLM
GTTTYSEANYAIRKESYIKRVRRSDNKTEYSSCTNSSQIDINTLSQACRSNGWSSWTTFNPGVNTLTDYDTSSDWTYSYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNRTTNTRSAS
VMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSDRRSDDNCSPNQTTNAVTAPGYGNGGFFPTQSAQGVTDSVIAFITNIGKVPLEPLTTGAISVPYDALNPKNLQEYGYL
RAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVPLPI
AGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPATPPEGTNPFDSVANTASYVLGKFNA
STGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQSILY
GTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTAKQM
NIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNITLS
NSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLNNNQ
TKTNSTYSSFGIRVVRLANLATNDSTYDASNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLTGRE
GMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGTGQNGWYRSL
SSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGSIDQ
NKENGSGFKTQTGTNCPVGASECNKNVIGSGIRGIAFVPKRDEPPVTNSCGKLQLSGNESGTGEWQCTSHLVPTRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=843399 QRA07_RS02630 WP_233734043.1 553254..557099(+) (pilY1) [Acinetobacter pittii strain PC870]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCGGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCGGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGTCTGGCCATGCTTAAAAACGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGATACTCGTGTGGGGTTGGGAAATTTCTCTGCAGATGGTGATAGTCGAAG
TGGACAAATTTTGGTGGCCGCTGCTCCCTTAGGGGATGCAAGTACTTTCAATACAGTAGGTTCTCAGCGTTATAAATTAA
AACAAGCAGTTGCTAGCTTAACTGCAAATGGGTATACCCCTTCAGCACATGCTTATGCAGAAGCTGCTGCTTATTTGATG
GGAACAACGACCTACTCAGAGGCAAATTATGCCATCCGAAAAGAAAGCTATATCAAACGAGTAAGACGATCCGATAATAA
AACTGAATACTCATCTTGTACCAACTCTTCACAAATTGATATTAATACTTTAAGTCAAGCATGTCGTTCTAATGGCTGGA
GTAGTTGGACCACGTTCAATCCTGGAGTAAATACGTTAACAGATTATGATACTTCTTCGGATTGGACCTATTCTTATACT
TATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAACGATACAGCCAG
CAATCCCAATATTGTTGTAGATAGAAATGCCTCTAACTTAAATGCCATTTATCAATCTCCTTTGCCAGCGGTGGCCAATC
GTCAAAGCTGTGATGGGCAGGGTATTTATTTCTTGTCAGATGGTGAGCCGAATCGAACAACAAATACACGTTCCGCAAGT
GTCATGTCGACTGCTTTAGGTAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACGACAGCGGACTC
TGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAACCCAGCTGGAGTTTCTATACAAACAG
CTTTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGTTCGAGAACC
CAATCTGACCGTAGAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCACTGCACCTGGTTATGGAAATGG
AGGCTTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGACAGCGTTATCGCATTTATTACTAACATCGGAAAAGTTCCTT
TAGAACCCTTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAACTTACAGGAATATGGTTACTTA
CGTGCTTTTGAGCCAAACCCGGCTAATACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGTTTTATCGGG
AACAAATGCTGGTGCTTTTGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGGGTACGAAAG
ATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGCGGTTCATATGCAAAAGTTCCTTTACCAATT
GCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAATCCGCAACTT
ATTTACTGATGTTTCCGCCGTTGCAGCGGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTACCCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAATTTAACGCA
TCAACTGGACAAGATATTTTAAAAGCTTTCCCAATTAGCTTGAAATTAAAAATATTAAATTATCTAGGTTACTCAACTGA
TATTAGTGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTATTCATTCTT
TACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGAAATTTAACATCTGCGCGTGAACAATCCATTCTCTAT
GGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCTGCCGATATATT
AAATGATCCAGTTGCATCAAAAGCTTTAGTGGTTGGTCAAAGTGATGCTACAGCTCCTGCTCACGGTATGGATGGGGCTT
GGGTATCTGACCCTGCATATAGTATTACTACAACAGGAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCAAAACAAATG
AATATTTATGGTGGCATGAGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTTCACCTAAGCTTCT
CTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAAATATACGTT
ATAACGGAGTTATTAAACGGGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATTACCTTGAGT
AATTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAACGCTTATGGTG
GACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCATAGTATTGTTAGTCGCATTAGTACCTTAGATCGAG
ATGCTGATGGTTTAGTCGACCATTTATATTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAATAATAACCAG
ACAAAAACAAATTCAACTTATAGCAGTTTCGGTATTCGAGTTGTTCGATTAGCCAATTTAGCAACGAATGACTCAACTTA
TGATGCCTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACGATTATGGAA
TCCGCACTTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACAGGTCGTGAG
GGGATGTCACCGAGCACCGCATTAAGCGGAAGACCTGTAAACAACGTTTATGGAATTATCGATAAGGACTTTATTAAAAA
GAATTTAATGTCTTTAACAGATAGCCAGCTTGAAACGAAAGATATTACTCGATCGACGCTTCGAAAAAATCCACAAATTT
TACGGTCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCCAATACGGGGACGGGACAAAATGGTTGGTATCGTTCACTT
TCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTTAAAGCTTTTGAAGAGCCTAT
GGCAATTACAGGGACTTTAATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCATGTTTACCCC
GTGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGGTCAATTGATCAA
AATAAAGAGAATGGAAGTGGATTCAAAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAATAAAAATGT
TATTGGCTCCGGTATTCGTGGCATAGCATTTGTTCCAAAAAGAGATGAACCTCCAGTGACTAATAGTTGTGGGAAATTAC
AACTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAGTGTACAAGTCATTTAGTTCCTACACGCTGGTATGAGCGTTAT
CGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(712-962)

von Willebrand factor type A domain (VWA_2)

(51-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

85.936

100

0.863