Detailed information NTG0843058

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: N024_RS03335
• Genome accession: NZ_CP127246
• Coordinates: 753295..754632 (-)
• Length: 445 a.a.
• NCBI ID: WP_003371131.1
• Uniprot ID: A0A6B2AV07
• Organism: Pseudomonas syringae CC457
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 748295..759632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N024_RS03320 (N024_03320)	-	748430..751627 (+)	3198	WP_024662488.1	PilC/PilY family type IV pilus protein	-
N024_RS03325 (N024_03325)	-	751639..752037 (+)	399	WP_003371127.1	type IV pilin protein	-
N024_RS03330 (N024_03330)	thiO	752063..753166 (+)	1104	WP_003371129.1	glycine oxidase ThiO	-
N024_RS03335 (N024_03335)	pilR	753295..754632 (-)	1338	WP_003371131.1	sigma-54 dependent transcriptional regulator	Regulator
N024_RS03340 (N024_03340)	pilS	754635..756227 (-)	1593	WP_003435661.1	ATP-binding protein	Regulator
N024_RS03345 (N024_03345)	-	756217..756456 (-)	240	WP_032609810.1	PP0621 family protein	-
N024_RS03350 (N024_03350)	-	756576..757598 (-)	1023	WP_003371138.1	outer membrane protein assembly factor BamD	-
N024_RS03355 (N024_03355)	rluD	757748..758710 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
N024_RS03360 (N024_03360)	pgeF	758707..759435 (+)	729	WP_024662489.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49707.69 Da
• Isoelectric Point: 6.2986

>NTDB_id=843058 N024_RS03335 WP_003371131.1 753295..754632(-) (pilR) [Pseudomonas syringae CC457]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=843058 N024_RS03335 WP_003371131.1 753295..754632(-) (pilR) [Pseudomonas syringae CC457]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACCCGCAGTGCCCGTAACGTCGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTTTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCCCACGGCAATCTGGACACGGCGATCAACGCGCTGAAGGCCGGGGCTTTCGACTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GCCTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAACTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGTCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCTTT
CATACCGGTGAACTGCGGCGCCATTCCTTCCGAGCTGATGGAGAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATTGT
CGACGTACGTATTCTGTGTGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCCGGTCGGTTTCGTCAGGATCTTTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCCCATTGCGCGAGCGCCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCACGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGATGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGATAACCTTGAAGAC
TACCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACACGCTGGAACCGCACTGCGGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-116)

3D structure

• AlphaFold DB: A0A6B2AV07

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	99.551	0.775
pilR	Acinetobacter baumannii strain A118	49.036	100	0.515
luxO	Vibrio cholerae strain A1552	37.838	99.775	0.378