Detailed information NTG0842888

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QQ016_RS16475
• Genome accession: NZ_CP127228
• Coordinates: 3674847..3675992 (-)
• Length: 381 a.a.
• NCBI ID: WP_111262597.1
• Uniprot ID: -
• Organism: Pseudomonas tohonis strain KRS022
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3669847..3680992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ016_RS16455	-	3670218..3671597 (-)	1380	WP_285960250.1	pyridoxal-phosphate dependent enzyme	-
QQ016_RS16460	-	3671710..3672105 (-)	396	Protein_3244	TM2 domain-containing protein	-
QQ016_RS16465	-	3672207..3673421 (+)	1215	WP_285960251.1	putative DNA modification/repair radical SAM protein	-
QQ016_RS16470	-	3673421..3674914 (+)	1494	WP_285960252.1	UdgX family uracil-DNA binding protein	-
QQ016_RS16475	pilU	3674847..3675992 (-)	1146	WP_111262597.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QQ016_RS16480	pilT	3676122..3677156 (-)	1035	WP_111262598.1	type IV pilus twitching motility protein PilT	Machinery gene
QQ016_RS16485	-	3677225..3677920 (+)	696	WP_285960253.1	YggS family pyridoxal phosphate-dependent enzyme	-
QQ016_RS16490	proC	3677935..3678753 (+)	819	WP_285960254.1	pyrroline-5-carboxylate reductase	-
QQ016_RS16495	-	3678759..3679976 (+)	1218	WP_285960255.1	hypothetical protein	-
QQ016_RS16500	-	3680127..3680720 (+)	594	WP_173175076.1	YggT family protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 42490.78 Da
• Isoelectric Point: 6.5931

>NTDB_id=842888 QQ016_RS16475 WP_111262597.1 3674847..3675992(-) (pilU) [Pseudomonas tohonis strain KRS022]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVTKNAMSPEQTRETVLAVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLDDLKLPEILKKLALTKRGLVLFVGATGTGKSTSLAAMIGYRNKNSSGHIISIED
PIEYIHQHQNCIVTQREVGIDTESFEVALKNTLRQAPDVILIGEVRTRETMDHAVAFAETGHLCLATLHANNANQALDRI
INFFPADRQQQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYTLYSQGEITYEDALLYADSANDLRLMIKLGSETDGDHLTSMSGGLSLEVSEEDPGRRFR

Nucleotide

• Length: 1146 bp

>NTDB_id=842888 QQ016_RS16475 WP_111262597.1 3674847..3675992(-) (pilU) [Pseudomonas tohonis strain KRS022]
ATGGAATTCGAGAAACTGTTGCGCCTGATGGTCGAGAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTCCCCCCGTC
GATGAAGGTCAACGGCAAGATCATGCCCGTGACCAAGAACGCCATGTCCCCGGAGCAGACCCGCGAGACCGTCCTCGCGG
TGATGAACGAGCAGCAGCGCCGCGACTTCGCCGAGAACCACGAGTGCAACTTCGCCATCAGCGCCCGTGGCATCGGTCGT
TTCCGCGTCAGCGCCTTCTACCAGCGCAACCTGGTGGGCATGGTGCTGCGCCGCATCGAGACCAACATCCCCACCCTGGA
TGACCTCAAGCTGCCGGAGATCCTCAAGAAGCTGGCGCTGACCAAGCGTGGCCTGGTGCTGTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACAGCAGCGGCCACATCATCTCCATCGAAGAC
CCGATCGAATACATCCACCAGCACCAGAACTGCATCGTCACCCAGCGCGAGGTGGGCATCGACACCGAGTCCTTCGAGGT
GGCGCTGAAGAACACCTTGCGCCAGGCGCCGGACGTGATCCTCATCGGCGAGGTGCGGACCCGCGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGGATC
ATCAACTTCTTCCCCGCCGACCGGCAGCAGCAGGTGTGGATGGACCTGTCCCTCAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCGGACGGCAAGGGCCGCCGCGCGGTGATCGAGGTGCTGATCAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTCCACGAGCTCAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACACCCTCTACTCCCAGGGCGAGATCACCTACGAAGACGCACTGCTCTACGCCGACTCGGCGAACGACCTGCGCCT
GATGATCAAGCTCGGTTCCGAGACCGACGGCGACCACCTCACGAGCATGAGCGGTGGCCTGTCGCTGGAGGTATCGGAGG
AAGACCCGGGCCGTCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (110-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	91.601	100	0.916
pilU	Acinetobacter baylyi ADP1	64.426	93.701	0.604
pilU	Vibrio cholerae strain A1552	58.857	91.864	0.541
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.155	88.189	0.381