Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | QQ016_RS16480 | Genome accession | NZ_CP127228 |
| Coordinates | 3676122..3677156 (-) | Length | 344 a.a. |
| NCBI ID | WP_111262598.1 | Uniprot ID | - |
| Organism | Pseudomonas tohonis strain KRS022 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3671122..3682156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQ016_RS16460 | - | 3671710..3672105 (-) | 396 | Protein_3244 | TM2 domain-containing protein | - |
| QQ016_RS16465 | - | 3672207..3673421 (+) | 1215 | WP_285960251.1 | putative DNA modification/repair radical SAM protein | - |
| QQ016_RS16470 | - | 3673421..3674914 (+) | 1494 | WP_285960252.1 | UdgX family uracil-DNA binding protein | - |
| QQ016_RS16475 | pilU | 3674847..3675992 (-) | 1146 | WP_111262597.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QQ016_RS16480 | pilT | 3676122..3677156 (-) | 1035 | WP_111262598.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QQ016_RS16485 | - | 3677225..3677920 (+) | 696 | WP_285960253.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| QQ016_RS16490 | proC | 3677935..3678753 (+) | 819 | WP_285960254.1 | pyrroline-5-carboxylate reductase | - |
| QQ016_RS16495 | - | 3678759..3679976 (+) | 1218 | WP_285960255.1 | hypothetical protein | - |
| QQ016_RS16500 | - | 3680127..3680720 (+) | 594 | WP_173175076.1 | YggT family protein | - |
| QQ016_RS16505 | - | 3680720..3681016 (+) | 297 | WP_213627928.1 | DUF167 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 37831.54 Da Isoelectric Point: 6.8360
>NTDB_id=842889 QQ016_RS16480 WP_111262598.1 3676122..3677156(-) (pilT) [Pseudomonas tohonis strain KRS022]
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLSMEDLGMGEIFKKISDVPRGLVLVTGPTGSGKSTTLAAMLDYLNGTKYHHILTVED
PIEFVHESKKCLINQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQSVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGGLGMQTLDSCL
KGLVAKGLVSRESAREKAKSPENF
MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQRKDYEEFLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLSMEDLGMGEIFKKISDVPRGLVLVTGPTGSGKSTTLAAMLDYLNGTKYHHILTVED
PIEFVHESKKCLINQREVHRDTLGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPAEEKSMVRSMLSESLQSVISQTLLKKIGGGRVAAHEIMIGTPAIRNLIREDKVAQMYSAIQTGGGLGMQTLDSCL
KGLVAKGLVSRESAREKAKSPENF
Nucleotide
Download Length: 1035 bp
>NTDB_id=842889 QQ016_RS16480 WP_111262598.1 3676122..3677156(-) (pilT) [Pseudomonas tohonis strain KRS022]
ATGGATATTACTGAGCTGCTCGCCTTCAGCGCGAAGCAGGGCGCATCCGACCTGCATCTCTCTGCCGGCCTGCCGCCGAT
GATCCGCGTCGATGGTGACGTGCGCCGCATCAACCTGCCGGCCATGGACCACAAGCAGGTGCACGCGCTGATCTACGACA
TCATGAATGACAAGCAGCGCAAGGACTACGAGGAGTTCCTCGAGACCGACTTCTCCTTCGAAGTCCCTGGCGTGGCGCGT
TTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCCGTGTTCCGTACCATTCCCTCGAAAGTACTGAGCATGGA
GGACCTGGGCATGGGCGAGATCTTCAAGAAGATCTCCGACGTGCCGCGCGGCCTGGTGCTGGTGACCGGGCCGACCGGTT
CGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACTACCTCAACGGCACCAAGTACCACCACATCCTCACGGTCGAGGAC
CCCATCGAATTCGTCCACGAATCGAAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCTCGGCTTCAACGA
AGCCCTGCGCTCGGCCCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAGAAGTCGATGGTCCGCTCGATGCTTTCCGAATCCCTCCAGTCGGTCATTTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGTCGCGTGGCGGCCCACGAAATCATGATCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCGCCATCCAGACCGGCGGTGGCCTCGGCATGCAGACCCTGGACAGCTGCCTC
AAGGGCCTGGTGGCCAAGGGCCTGGTGAGCCGCGAAAGCGCTCGCGAGAAGGCCAAGAGCCCGGAAAACTTCTAA
ATGGATATTACTGAGCTGCTCGCCTTCAGCGCGAAGCAGGGCGCATCCGACCTGCATCTCTCTGCCGGCCTGCCGCCGAT
GATCCGCGTCGATGGTGACGTGCGCCGCATCAACCTGCCGGCCATGGACCACAAGCAGGTGCACGCGCTGATCTACGACA
TCATGAATGACAAGCAGCGCAAGGACTACGAGGAGTTCCTCGAGACCGACTTCTCCTTCGAAGTCCCTGGCGTGGCGCGT
TTCCGGGTCAACGCCTTCAACCAGAACCGTGGCGCCGGCGCCGTGTTCCGTACCATTCCCTCGAAAGTACTGAGCATGGA
GGACCTGGGCATGGGCGAGATCTTCAAGAAGATCTCCGACGTGCCGCGCGGCCTGGTGCTGGTGACCGGGCCGACCGGTT
CGGGCAAGTCCACCACCCTGGCGGCGATGCTCGACTACCTCAACGGCACCAAGTACCACCACATCCTCACGGTCGAGGAC
CCCATCGAATTCGTCCACGAATCGAAGAAGTGCCTGATCAACCAGCGCGAGGTGCACCGCGACACCCTCGGCTTCAACGA
AGCCCTGCGCTCGGCCCTGCGGGAAGACCCGGACATCATCCTGGTGGGCGAGATGCGCGACCTGGAGACCATCCGCCTGG
CGCTGACCGCCGCGGAAACCGGCCACCTGGTGTTCGGCACCCTGCACACCACCTCCGCCGCCAAGACCATCGACCGGGTG
GTCGACGTGTTCCCGGCCGAGGAGAAGTCGATGGTCCGCTCGATGCTTTCCGAATCCCTCCAGTCGGTCATTTCCCAGAC
CCTGCTGAAGAAGATCGGCGGCGGTCGCGTGGCGGCCCACGAAATCATGATCGGCACCCCGGCCATCCGTAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTATTCCGCCATCCAGACCGGCGGTGGCCTCGGCATGCAGACCCTGGACAGCTGCCTC
AAGGGCCTGGTGGCCAAGGGCCTGGTGAGCCGCGAAAGCGCTCGCGAGAAGGCCAAGAGCCCGGAAAACTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
94.477 |
100 |
0.945 |
| pilT | Pseudomonas aeruginosa PAK |
94.186 |
100 |
0.942 |
| pilT | Acinetobacter baumannii D1279779 |
85.756 |
100 |
0.858 |
| pilT | Acinetobacter baumannii strain A118 |
85.756 |
100 |
0.858 |
| pilT | Acinetobacter nosocomialis M2 |
85.465 |
100 |
0.855 |
| pilT | Acinetobacter baylyi ADP1 |
83.721 |
100 |
0.837 |
| pilT | Legionella pneumophila strain Lp02 |
75.444 |
98.256 |
0.741 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.444 |
98.256 |
0.741 |
| pilT | Neisseria meningitidis 8013 |
68.116 |
100 |
0.683 |
| pilT | Neisseria gonorrhoeae MS11 |
67.826 |
100 |
0.68 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.139 |
97.965 |
0.677 |
| pilT | Vibrio cholerae strain A1552 |
69.139 |
97.965 |
0.677 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.304 |
100 |
0.515 |
| pilU | Vibrio cholerae strain A1552 |
39.71 |
100 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.13 |
100 |
0.392 |