Detailed information NTG0842876

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: QQ016_RS09940
• Genome accession: NZ_CP127228
• Coordinates: 2242477..2244699 (-)
• Length: 740 a.a.
• NCBI ID: WP_285962205.1
• Uniprot ID: -
• Organism: Pseudomonas tohonis strain KRS022
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2237477..2249699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ016_RS09905	murB	2237860..2238879 (-)	1020	WP_285962202.1	UDP-N-acetylmuramate dehydrogenase	-
QQ016_RS09910	-	2238876..2239334 (-)	459	WP_285962203.1	low molecular weight protein-tyrosine-phosphatase	-
QQ016_RS09915	kdsB	2239334..2240098 (-)	765	WP_271105399.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
QQ016_RS09920	-	2240098..2240283 (-)	186	WP_111262773.1	Trm112 family protein	-
QQ016_RS09925	lpxK	2240325..2241329 (-)	1005	WP_285962204.1	tetraacyldisaccharide 4'-kinase	-
QQ016_RS09930	-	2241329..2241772 (-)	444	WP_173173799.1	biopolymer transporter ExbD	-
QQ016_RS09935	exbB	2241769..2242404 (-)	636	WP_173173797.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
QQ016_RS09940	comA	2242477..2244699 (-)	2223	WP_285962205.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
QQ016_RS09945	-	2244850..2245380 (+)	531	WP_263153355.1	DUF2062 domain-containing protein	-
QQ016_RS09950	-	2245451..2246695 (-)	1245	WP_263153354.1	lipoprotein-releasing ABC transporter permease subunit	-
QQ016_RS09955	lolD	2246697..2247380 (-)	684	WP_263154424.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
QQ016_RS09960	-	2247382..2248632 (-)	1251	WP_271105395.1	lipoprotein-releasing ABC transporter permease subunit	-
QQ016_RS09965	-	2248729..2249316 (+)	588	WP_263153352.1	PilZ domain-containing protein	-
QQ016_RS09970	-	2249321..2249614 (+)	294	WP_263153351.1	phosphodiesterase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 79012.41 Da
• Isoelectric Point: 9.9639

>NTDB_id=842876 QQ016_RS09940 WP_285962205.1 2242477..2244699(-) (comA) [Pseudomonas tohonis strain KRS022]
MTWALVALGGGLAAVRFMPALPPTAWLLAAAALGLALLAGRGRAPGLFLLGMAWGCCCAQWALDDRLDPSLDGETRWLEG
RVVGLPQRGNGVVRFELDDPQMPGAELPSRIRLSWYGGPQLRGGERWRLAATLKRPRGLVNPHAFDYEAWLLARHIGASG
SVKAGKPLAPGNGPAAWRDRLRQGIEQVPAHGRNGGIAALVLGDGSGLVAADWRLLQDTGTVHLMVISGQHIALLAAVLY
GAVALLARLGLWPGRLPWLPCACALAFVGSLGYGLLAGFDVPVQRACLMTAIALLWRLRFRHLGVVRPLLVAFCVVLAAD
PLASLQAGFWLSFGAVALLILIFAGRMGVPPWWLSWWRAQWTMGLALSPLLLALALPISLSGPLANLVAVPWVSLVSVPL
SLLGTALQGVPWLGAGLLWLAGGSLELLFRLLAWIAAWVPAWQATAVPPWAWLLGMGGCLLLVLPAGVPVRVLGVALLLP
TLFPPVERPSWGKADIWLLDVGQGLSVLVRTREHALLYDTGARRGDFDMGERVVLPSLLGLGVRQLDQLLLSHADNDHAG
GAGAVLRGMPVARVVSGEPLRLPAALGAEACGNQAWEWDGVRLRTWRWEQARSGNDRSCVLSVEAHGERIHLTGDIGVQA
EAAWIASGEPLRADWLLAPHHGSASSSSAALIEAVSPRGALITRGSHNAFGHPHPSVVARYRASGVAIHDTAQSGALLIR
LGERDEVRGLRTQARFWREK

Nucleotide

• Length: 2223 bp

>NTDB_id=842876 QQ016_RS09940 WP_285962205.1 2242477..2244699(-) (comA) [Pseudomonas tohonis strain KRS022]
ATGACGTGGGCGTTGGTGGCGCTGGGCGGTGGCCTGGCTGCGGTGCGGTTCATGCCGGCGTTGCCGCCGACCGCCTGGCT
GCTCGCGGCGGCGGCGCTGGGGCTGGCATTGCTGGCCGGGCGCGGGCGGGCGCCCGGTCTGTTCCTGCTGGGGATGGCCT
GGGGCTGCTGCTGCGCCCAATGGGCCCTGGATGATCGGCTGGACCCATCCCTCGATGGCGAGACCCGCTGGCTGGAGGGG
CGGGTCGTCGGGCTGCCGCAACGGGGCAACGGGGTGGTGCGCTTCGAGTTGGACGATCCGCAGATGCCAGGTGCCGAACT
GCCGTCGCGTATCCGCCTGTCCTGGTACGGCGGGCCACAGCTGCGTGGCGGGGAGCGCTGGCGCCTGGCCGCGACCCTCA
AGCGCCCGCGCGGCCTGGTCAATCCGCACGCCTTCGATTACGAGGCCTGGCTCCTTGCCCGGCACATAGGCGCCAGCGGT
TCGGTGAAGGCCGGCAAGCCGTTGGCGCCGGGCAATGGCCCCGCCGCCTGGCGTGACCGCCTGCGCCAAGGCATCGAGCA
GGTGCCGGCCCATGGGCGCAACGGCGGCATCGCGGCGCTGGTACTCGGCGACGGCTCGGGACTGGTCGCTGCGGATTGGC
GCTTGCTGCAGGACACGGGGACCGTGCACCTGATGGTGATCTCCGGCCAGCACATCGCCTTGCTCGCCGCTGTGCTCTAC
GGCGCCGTCGCGCTGCTGGCGCGGCTCGGGCTCTGGCCCGGACGCCTGCCCTGGTTGCCCTGCGCCTGTGCCCTGGCGTT
CGTCGGATCACTGGGCTACGGCTTGCTGGCCGGCTTCGACGTGCCGGTGCAGCGCGCTTGCCTGATGACCGCCATTGCGC
TGCTCTGGCGCTTGCGTTTCCGCCACCTCGGGGTGGTCCGCCCGTTGCTGGTGGCCTTCTGCGTGGTGCTGGCGGCGGAT
CCGCTGGCCTCCCTGCAGGCAGGATTCTGGTTGTCCTTCGGCGCCGTGGCGTTGCTCATCCTGATCTTCGCCGGGCGGAT
GGGCGTGCCGCCCTGGTGGCTCAGCTGGTGGCGCGCGCAATGGACCATGGGGCTGGCGCTGTCACCCTTGCTGCTGGCGT
TGGCGCTGCCCATCAGCCTGAGTGGCCCGCTGGCCAACCTGGTCGCCGTGCCCTGGGTCAGCCTGGTCTCGGTGCCGCTG
TCCCTGCTCGGGACTGCGCTGCAGGGCGTGCCCTGGCTGGGCGCAGGGCTGCTGTGGCTGGCCGGCGGTTCGCTGGAGCT
GTTGTTCCGGCTGCTGGCCTGGATCGCCGCGTGGGTTCCGGCCTGGCAGGCGACGGCCGTTCCCCCATGGGCCTGGCTGC
TGGGCATGGGCGGGTGCCTGTTGCTGGTTCTTCCGGCGGGCGTGCCGGTGCGCGTCCTGGGCGTGGCCCTGCTGTTGCCG
ACGTTGTTTCCTCCCGTGGAGCGGCCGTCCTGGGGAAAGGCGGACATCTGGCTGCTGGATGTCGGGCAGGGGCTGTCGGT
GCTGGTGCGGACCCGGGAGCACGCGCTGCTCTACGACACGGGCGCCCGGCGCGGTGACTTCGACATGGGCGAGCGGGTGG
TGCTGCCGAGCCTGCTGGGGCTGGGTGTGCGGCAGCTGGACCAGTTGCTGCTCAGCCACGCCGACAACGACCACGCCGGC
GGTGCCGGAGCGGTACTGCGCGGCATGCCGGTGGCGCGGGTGGTCAGCGGTGAGCCGCTGCGCCTGCCGGCTGCGCTGGG
CGCCGAGGCCTGTGGCAACCAAGCGTGGGAGTGGGACGGCGTGCGCCTGCGTACCTGGCGCTGGGAGCAGGCGCGCAGTG
GCAACGACCGGTCCTGTGTGCTCAGCGTCGAGGCGCACGGCGAGCGCATCCACCTGACCGGCGACATCGGTGTCCAGGCC
GAGGCCGCCTGGATCGCCAGCGGTGAACCCCTGCGCGCCGACTGGCTGCTGGCACCGCACCATGGCAGTGCCAGCTCTTC
CTCCGCGGCGCTGATCGAGGCGGTGTCGCCCCGTGGTGCGTTGATCACCCGGGGCAGCCACAACGCCTTCGGCCATCCGC
ATCCGTCCGTCGTCGCCCGCTACCGTGCCTCTGGCGTCGCGATCCACGACACGGCGCAGTCCGGTGCGCTGCTGATCCGT
CTCGGCGAACGTGACGAGGTGCGTGGACTGCGGACCCAGGCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (19-165)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-682)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.444	97.297	0.627
comA	Ralstonia pseudosolanacearum GMI1000	36.247	100	0.381