Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QQ016_RS09935 Genome accession   NZ_CP127228
Coordinates   2241769..2242404 (-) Length   211 a.a.
NCBI ID   WP_173173797.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain KRS022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2236769..2247404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ016_RS09905 murB 2237860..2238879 (-) 1020 WP_285962202.1 UDP-N-acetylmuramate dehydrogenase -
  QQ016_RS09910 - 2238876..2239334 (-) 459 WP_285962203.1 low molecular weight protein-tyrosine-phosphatase -
  QQ016_RS09915 kdsB 2239334..2240098 (-) 765 WP_271105399.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQ016_RS09920 - 2240098..2240283 (-) 186 WP_111262773.1 Trm112 family protein -
  QQ016_RS09925 lpxK 2240325..2241329 (-) 1005 WP_285962204.1 tetraacyldisaccharide 4'-kinase -
  QQ016_RS09930 - 2241329..2241772 (-) 444 WP_173173799.1 biopolymer transporter ExbD -
  QQ016_RS09935 exbB 2241769..2242404 (-) 636 WP_173173797.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QQ016_RS09940 comA 2242477..2244699 (-) 2223 WP_285962205.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQ016_RS09945 - 2244850..2245380 (+) 531 WP_263153355.1 DUF2062 domain-containing protein -
  QQ016_RS09950 - 2245451..2246695 (-) 1245 WP_263153354.1 lipoprotein-releasing ABC transporter permease subunit -
  QQ016_RS09955 lolD 2246697..2247380 (-) 684 WP_263154424.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22976.18 Da        Isoelectric Point: 6.7295

>NTDB_id=842875 QQ016_RS09935 WP_173173797.1 2241769..2242404(-) (exbB) [Pseudomonas tohonis strain KRS022]
MWELVKAGGWMMLPIILSSIAATAIIVERLWTLRANRIAPPQLLGQVWRMVKDKQLNAQKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNTLGTIAAMGPLLGLLGTVFGMIEIFSGFMDNGMANAPALAGGIGKALITTAA
GLMVAIPAVFFHRFLLRRVDELVVAMEQEAIKLVEVTQGDREVDFAEEAKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=842875 QQ016_RS09935 WP_173173797.1 2241769..2242404(-) (exbB) [Pseudomonas tohonis strain KRS022]
GTGTGGGAGCTGGTCAAAGCAGGCGGCTGGATGATGCTGCCTATCATTCTGAGTTCCATCGCAGCCACCGCCATCATTGT
GGAGCGCCTGTGGACGCTCCGTGCCAATCGCATCGCACCGCCGCAATTGCTCGGCCAGGTGTGGCGCATGGTCAAGGACA
AGCAGCTCAACGCGCAGAAGCTCAAGGAACTGCGTGCATCGTCCCCGCTGGGCGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCATCCCGCGTCATCCATGAGCTGGAGCGCTACCT
CAATACCCTGGGCACCATCGCCGCCATGGGCCCGCTGCTGGGCCTTTTGGGTACCGTGTTCGGGATGATCGAGATCTTCA
GCGGCTTCATGGACAACGGCATGGCAAACGCCCCGGCCCTGGCCGGCGGTATCGGCAAGGCGCTGATCACCACCGCGGCG
GGCCTGATGGTCGCCATCCCCGCCGTGTTCTTCCACCGTTTCCTGCTGCGTCGTGTCGACGAGCTGGTGGTGGCCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTGACCCAGGGCGATCGTGAAGTGGACTTCGCAGAGGAAGCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.609

98.104

0.81