Detailed information NTG0842872

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QQ016_RS07410
• Genome accession: NZ_CP127228
• Coordinates: 1696180..1697397 (-)
• Length: 405 a.a.
• NCBI ID: WP_285962008.1
• Uniprot ID: -
• Organism: Pseudomonas tohonis strain KRS022
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1691180..1702397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ016_RS07390	-	1691206..1692120 (+)	915	WP_285962005.1	LysR family transcriptional regulator	-
QQ016_RS07395	-	1692228..1694183 (+)	1956	WP_285962006.1	acetoacetate--CoA ligase	-
QQ016_RS07400	-	1694341..1695312 (+)	972	WP_263153811.1	DUF4431 domain-containing protein	-
QQ016_RS07405	-	1695388..1696146 (+)	759	WP_285962007.1	transporter substrate-binding domain-containing protein	-
QQ016_RS07410	pilU	1696180..1697397 (-)	1218	WP_285962008.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QQ016_RS07415	-	1697540..1697818 (+)	279	WP_044409048.1	peptidylprolyl isomerase	-
QQ016_RS07420	-	1697886..1698152 (-)	267	WP_263153804.1	hypothetical protein	-
QQ016_RS07425	-	1698345..1699934 (-)	1590	WP_173180316.1	ABC-F family ATPase	-
QQ016_RS07430	-	1700225..1701442 (-)	1218	WP_285962009.1	crosslink repair DNA glycosylase YcaQ family protein	-
QQ016_RS07435	-	1701465..1701965 (-)	501	WP_285962010.1	DUF3291 domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44757.19 Da
• Isoelectric Point: 6.7824

>NTDB_id=842872 QQ016_RS07410 WP_285962008.1 1696180..1697397(-) (pilU) [Pseudomonas tohonis strain KRS022]
MDLPSMLKVLASQDGSDLYLSTGAPPCAKFNGVLKPLGTDPLKPGDVARIAESIMDPEQRGEFDRELEMNLAISLPNIGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHALAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTSDGKRRAAVEVLLGTATISDLIKRGDFSSIKEIMEKSKALGMQTFDQAL
FDLVVEGSIQEEEAIKNADSANNLRLKLKLHRDGPGTRPTAARTPPPAPTPKATPTQDAASWGLELKLEELPEDEPPPED
PGKHY

Nucleotide

• Length: 1218 bp

>NTDB_id=842872 QQ016_RS07410 WP_285962008.1 1696180..1697397(-) (pilU) [Pseudomonas tohonis strain KRS022]
ATGGATCTCCCCTCGATGCTCAAGGTTCTGGCCTCCCAGGATGGCTCGGACCTCTACCTGTCCACCGGTGCGCCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTGGGCACCGACCCGCTCAAGCCGGGCGACGTGGCGCGTATCGCCGAATCCA
TCATGGACCCGGAGCAGCGCGGCGAATTCGACCGCGAGCTGGAGATGAACCTGGCCATCTCCCTGCCCAACATCGGCCGC
TTCCGCATCAACATCTTCAAGCAGCGCAACGAGGTCTCCATCGTCGCGCGCAACATCAAGCTGGATATCCCGAAGTTCGA
GGACCTCAAGCTCCCCGAAGTGCTGCTCAAGGTGGTGATGGAAAAACGCGGCCTGGTGCTCTTCGTCGGCGGCACAGGCT
CGGGCAAGTCCACCTCCCTGGCCGCGCTGATCGACTACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCCATCATCAACCAGCGTGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
CGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAACACG
CCCTGGCCTTCGCCGACACCGGCCACCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAGGAACGCCGGCCGCAGCTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAGCG
CCTGGTGCGCACCTCCGACGGCAAGCGCCGCGCGGCGGTGGAAGTGCTGCTGGGCACCGCCACCATCAGCGACCTGATCA
AGCGCGGCGACTTCAGCTCGATCAAGGAAATCATGGAGAAGTCCAAGGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGTGGTGGAGGGCTCGATCCAGGAAGAGGAAGCGATCAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GCTCAAGCTGCACCGTGACGGCCCCGGCACCCGGCCCACCGCCGCACGCACCCCGCCCCCCGCACCAACGCCCAAGGCCA
CCCCGACCCAGGACGCCGCCAGTTGGGGCCTGGAGCTCAAGCTCGAAGAACTGCCCGAGGACGAGCCGCCGCCGGAAGAC
CCGGGCAAGCACTACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	55.372	89.63	0.496
pilU	Acinetobacter baylyi ADP1	53.125	86.914	0.462
pilU	Vibrio cholerae strain A1552	51.841	87.16	0.452