Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QRX25_RS17190 Genome accession   NZ_CP127224
Coordinates   3344284..3344973 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. L381     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3339284..3349973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS17155 (QRX25_17150) - 3339483..3339965 (-) 483 WP_013353780.1 flagellar protein FlgN -
  QRX25_RS17160 (QRX25_17155) flgM 3339980..3340246 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRX25_RS17165 (QRX25_17160) - 3340316..3340735 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  QRX25_RS17170 (QRX25_17165) comFC 3340809..3341504 (-) 696 WP_231131128.1 double zinc ribbon domain-containing protein Machinery gene
  QRX25_RS17175 (QRX25_17170) - 3341504..3341788 (-) 285 WP_013353784.1 competence protein ComFB -
  QRX25_RS17180 (QRX25_17175) comFA 3341847..3343232 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  QRX25_RS17185 (QRX25_17180) - 3343339..3344187 (-) 849 WP_212099493.1 DegV family protein -
  QRX25_RS17190 (QRX25_17185) degU 3344284..3344973 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRX25_RS17195 (QRX25_17190) degS 3345050..3346213 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator
  QRX25_RS17200 (QRX25_17195) - 3346436..3347083 (+) 648 WP_212099496.1 YigZ family protein -
  QRX25_RS17205 (QRX25_17200) - 3347088..3348269 (+) 1182 WP_065982456.1 LCP family protein -
  QRX25_RS17210 (QRX25_17205) - 3348370..3349446 (-) 1077 WP_060964142.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=842841 QRX25_RS17190 WP_003219701.1 3344284..3344973(-) (degU) [Bacillus sp. L381]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=842841 QRX25_RS17190 WP_003219701.1 3344284..3344973(-) (degU) [Bacillus sp. L381]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGTGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGATGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1