Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRX25_RS17180 Genome accession   NZ_CP127224
Coordinates   3341847..3343232 (-) Length   461 a.a.
NCBI ID   WP_212099490.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3336847..3348232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS17145 (QRX25_17140) flgL 3337021..3337938 (-) 918 WP_115996789.1 flagellar hook-associated protein FlgL -
  QRX25_RS17150 (QRX25_17145) flgK 3337950..3339467 (-) 1518 WP_065982450.1 flagellar hook-associated protein FlgK -
  QRX25_RS17155 (QRX25_17150) - 3339483..3339965 (-) 483 WP_013353780.1 flagellar protein FlgN -
  QRX25_RS17160 (QRX25_17155) flgM 3339980..3340246 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRX25_RS17165 (QRX25_17160) - 3340316..3340735 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  QRX25_RS17170 (QRX25_17165) comFC 3340809..3341504 (-) 696 WP_231131128.1 double zinc ribbon domain-containing protein Machinery gene
  QRX25_RS17175 (QRX25_17170) - 3341504..3341788 (-) 285 WP_013353784.1 competence protein ComFB -
  QRX25_RS17180 (QRX25_17175) comFA 3341847..3343232 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  QRX25_RS17185 (QRX25_17180) - 3343339..3344187 (-) 849 WP_212099493.1 DegV family protein -
  QRX25_RS17190 (QRX25_17185) degU 3344284..3344973 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRX25_RS17195 (QRX25_17190) degS 3345050..3346213 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator
  QRX25_RS17200 (QRX25_17195) - 3346436..3347083 (+) 648 WP_212099496.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52634.13 Da        Isoelectric Point: 10.0235

>NTDB_id=842840 QRX25_RS17180 WP_212099490.1 3341847..3343232(-) (comFA) [Bacillus sp. L381]
MSGGVSEFSEVRDFFYGRHLLRSEIPFSDQCIKRFIEEKYITAEPSVIRRKNRYVCRRCGQSDQSCFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYSWNQAAENSWEPIKLSWEGTLTDGQKQAADALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRVDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=842840 QRX25_RS17180 WP_212099490.1 3341847..3343232(-) (comFA) [Bacillus sp. L381]
ATGTCCGGAGGTGTTTCAGAATTTTCGGAGGTGCGGGATTTCTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAACGTTTTATAGAAGAAAAATATATAACGGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGTCGATGCGGCCAGTCTGACCAATCCTGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAACTGACGTCATTATACTCTTGGAATCAAGCGGCTGAAAACAG
CTGGGAGCCTATAAAGCTTTCTTGGGAAGGAACACTGACAGATGGACAGAAGCAGGCGGCGGATGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTAGAAGTTTCTGCTCTGTACGGCGGCAGTGAAGACAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCTCACCAGCTGATGCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAGACAACGGATTATTT
TCAAAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTGAAACGGTTCAGAGAAG
GACGGGTTGACTTGCTGGTAACGACTACGATTTTAGAAAGAGGCGTTACCGTACCCAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTCACTGAGAGCGCACTCGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGTATGAAGAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625