Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QRX25_RS17170 Genome accession   NZ_CP127224
Coordinates   3340809..3341504 (-) Length   231 a.a.
NCBI ID   WP_231131128.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3335809..3346504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS17135 (QRX25_17130) fliW 3335900..3336331 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  QRX25_RS17140 (QRX25_17135) - 3336361..3336930 (-) 570 WP_115996791.1 DUF6470 family protein -
  QRX25_RS17145 (QRX25_17140) flgL 3337021..3337938 (-) 918 WP_115996789.1 flagellar hook-associated protein FlgL -
  QRX25_RS17150 (QRX25_17145) flgK 3337950..3339467 (-) 1518 WP_065982450.1 flagellar hook-associated protein FlgK -
  QRX25_RS17155 (QRX25_17150) - 3339483..3339965 (-) 483 WP_013353780.1 flagellar protein FlgN -
  QRX25_RS17160 (QRX25_17155) flgM 3339980..3340246 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRX25_RS17165 (QRX25_17160) - 3340316..3340735 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  QRX25_RS17170 (QRX25_17165) comFC 3340809..3341504 (-) 696 WP_231131128.1 double zinc ribbon domain-containing protein Machinery gene
  QRX25_RS17175 (QRX25_17170) - 3341504..3341788 (-) 285 WP_013353784.1 competence protein ComFB -
  QRX25_RS17180 (QRX25_17175) comFA 3341847..3343232 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  QRX25_RS17185 (QRX25_17180) - 3343339..3344187 (-) 849 WP_212099493.1 DegV family protein -
  QRX25_RS17190 (QRX25_17185) degU 3344284..3344973 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRX25_RS17195 (QRX25_17190) degS 3345050..3346213 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25565.30 Da        Isoelectric Point: 8.2933

>NTDB_id=842839 QRX25_RS17170 WP_231131128.1 3340809..3341504(-) (comFC) [Bacillus sp. L381]
MSLNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEQRFLLRQNRS
VYLYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLADRGFNQSELLASLLGMPVISPLI
RLNNEKQSKKSKTERLSGEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 696 bp        

>NTDB_id=842839 QRX25_RS17170 WP_231131128.1 3340809..3341504(-) (comFC) [Bacillus sp. L381]
ATTTCTCTGAATTGTTTATTGTGTGACTCCCCAATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGA
GCAAGAGGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATTGAAGGCCCCGTATGCAGTTTATGCGGAAGGCCTCAGC
AGTCAAACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCG
GTTTATTTGTATAATGATGCAATGAAGGATTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATT
TGAACGTGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCG
AACGGCTGGCGGACCGCGGATTCAATCAATCCGAGCTGCTGGCCTCCCTGCTCGGAATGCCCGTCATTTCCCCCCTCATC
AGACTGAACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGGAGAAAAAAAGTTTTCAGCTGCCGAAAA
CTCCGCAGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCATCAAGCTGCCGAAGCTC
TGCTGACTGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(168-229)

Double zinc ribbon domain (DZR_2)

(4-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.699

99.134

0.602