Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QRX25_RS11990 Genome accession   NZ_CP127224
Coordinates   2362755..2363825 (-) Length   356 a.a.
NCBI ID   WP_115997636.1    Uniprot ID   -
Organism   Bacillus sp. L381     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2357755..2368825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX25_RS11940 (QRX25_11935) sipW 2357814..2358398 (-) 585 WP_212098460.1 signal peptidase I SipW -
  QRX25_RS11945 (QRX25_11940) tapA 2358370..2359041 (-) 672 WP_212098462.1 amyloid fiber anchoring/assembly protein TapA -
  QRX25_RS11950 (QRX25_11945) - 2359299..2359628 (+) 330 WP_045510605.1 DUF3889 domain-containing protein -
  QRX25_RS11955 (QRX25_11950) - 2359669..2359848 (-) 180 WP_016938971.1 YqzE family protein -
  QRX25_RS11960 (QRX25_11955) comGG 2359905..2360282 (-) 378 WP_212098464.1 competence type IV pilus minor pilin ComGG Machinery gene
  QRX25_RS11965 (QRX25_11960) comGF 2360284..2360784 (-) 501 WP_249199234.1 competence type IV pilus minor pilin ComGF -
  QRX25_RS11970 (QRX25_11965) comGE 2360693..2361007 (-) 315 WP_065981881.1 competence type IV pilus minor pilin ComGE Machinery gene
  QRX25_RS11975 (QRX25_11970) comGD 2360991..2361428 (-) 438 WP_045510590.1 competence type IV pilus minor pilin ComGD Machinery gene
  QRX25_RS11980 (QRX25_11975) comGC 2361418..2361726 (-) 309 WP_115997634.1 competence type IV pilus major pilin ComGC Machinery gene
  QRX25_RS11985 (QRX25_11980) comGB 2361731..2362768 (-) 1038 WP_212098466.1 competence type IV pilus assembly protein ComGB Machinery gene
  QRX25_RS11990 (QRX25_11985) comGA 2362755..2363825 (-) 1071 WP_115997636.1 competence type IV pilus ATPase ComGA Machinery gene
  QRX25_RS11995 (QRX25_11990) - 2364018..2364968 (-) 951 WP_212098468.1 magnesium transporter CorA family protein -
  QRX25_RS12000 (QRX25_11995) - 2365115..2366416 (+) 1302 WP_212098471.1 hemolysin family protein -
  QRX25_RS12005 (QRX25_12000) - 2366454..2367284 (-) 831 WP_212098474.1 STAS domain-containing protein -
  QRX25_RS12015 (QRX25_12010) - 2367486..2367866 (-) 381 WP_115997640.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QRX25_RS12020 (QRX25_12015) - 2368102..2368347 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40486.69 Da        Isoelectric Point: 8.8524

>NTDB_id=842821 QRX25_RS11990 WP_115997636.1 2362755..2363825(-) (comGA) [Bacillus sp. L381]
MENIETYSRNIINEAYMARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFPGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSSGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCETDNCSVYCRLYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=842821 QRX25_RS11990 WP_115997636.1 2362755..2363825(-) (comGA) [Bacillus sp. L381]
ATGGAGAATATTGAAACATACAGCAGGAACATCATCAACGAGGCCTATATGGCAAGGGCTTCAGATATACACATTGTGCC
GAGGGAAAGGGATGCTTTCATCCATTTTCGCATCGGTCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAATTTTTATCGGCCATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGATCACTGTCT
CTGCCGCTTCCAACGGAAACCGTTCATTTGAGGATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
ATTGCCTAAGAGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCCGGGGGCAGGCGCCGCATTATTATCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTTTTTACCGGCCCGACCGGATCTGGAAAAACAACTACCCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTGGAAGATCCCGTAGAAACGAGAGATGAAGATGTTTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCTCCGGTTTAAAAGCGATTTTAAGACATGACCCCGATATGATCATCTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGTGCGGCCATGACGGGCCACCTCGTACTTTCAAGCCTGCAT
ACAAGAGATGCCAAGGGCGCCATATACAGGCTGCTGGAGTTCGGGGTGAACATGACGGAAATTGAACAAACCGTAATTGC
CATCGCCGCTCAGCGTCTGGTTGATTTAACGTGTCCGTTTTGCGAAACGGACAACTGTTCCGTGTACTGCCGTCTGTACA
GGCAGACACGCCGTGCGGGGATTTATGAACTGCTTTACGGAAAAAATCTCACCCAGTGCTTTCAGGAAGCAAAAGGAGAG
CACGCCAATTTTCAATATCAGACGCTTCGCAGGCTGATCAGAAAAGGTATCGCGCTCGGTTATGTCACGACTGATAATTA
TGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.584

100

0.826
  pilB Glaesserella parasuis strain SC1401

38.506

97.753

0.376
  pilF Thermus thermophilus HB27

37.892

98.596

0.374