Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   QQS40_RS10605 Genome accession   NZ_CP127167
Coordinates   2109914..2110630 (-) Length   238 a.a.
NCBI ID   WP_369866785.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104914..2115630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS10585 nrdR 2105030..2105479 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  QQS40_RS10590 recC 2105557..2108916 (-) 3360 WP_297569274.1 exodeoxyribonuclease V subunit gamma -
  QQS40_RS10595 comQ 2108954..2109220 (-) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  QQS40_RS10600 comP 2109234..2109914 (-) 681 WP_289902453.1 DUF2572 family protein Machinery gene
  QQS40_RS10605 comO 2109914..2110630 (-) 717 WP_369866785.1 hypothetical protein Machinery gene
  QQS40_RS10610 comN 2110627..2111145 (-) 519 WP_297569283.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  QQS40_RS10615 suhB 2111346..2112146 (+) 801 WP_289902456.1 inositol-1-monophosphatase -
  QQS40_RS10620 bioB 2112192..2113208 (-) 1017 WP_102704187.1 biotin synthase BioB -
  QQS40_RS10625 thiQ 2113282..2113911 (-) 630 WP_308602946.1 thiamine ABC transporter ATP-binding protein -
  QQS40_RS10630 thiP 2113904..2115508 (-) 1605 WP_329505236.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26761.87 Da        Isoelectric Point: 7.5544

>NTDB_id=842327 QQS40_RS10605 WP_369866785.1 2109914..2110630(-) (comO) [Haemophilus parainfluenzae strain HP01]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQSELQRTIQLIGKDLRRVGFRAVNQKLIEDNLVL
FELDEKGTSITIAQADNAPSNSCVLFFYDLNTNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYKNAV
NADCRSEECQRALMQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLATHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=842327 QQS40_RS10605 WP_369866785.1 2109914..2110630(-) (comO) [Haemophilus parainfluenzae strain HP01]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTATTGTTATTAGTTGC
ACAATTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAATTACAGTCTGAATTGCAACGTACCA
TTCAACTCATCGGTAAAGATCTGCGTCGCGTAGGTTTTCGAGCCGTAAACCAAAAACTCATCGAGGATAATCTGGTTTTA
TTCGAATTAGACGAAAAGGGTACTTCAATAACCATTGCTCAAGCAGACAATGCACCATCAAATAGTTGTGTCTTGTTTTT
TTATGATTTAAATACTAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCGTTAAAAATGTGGCAA
AAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGGCAAAATGATCGAAACCAAACAAACTTATAAAAATGCGGTA
AATGCAGATTGTCGCTCGGAAGAATGTCAGCGTGCTCTAATGCAATCTACTTGTAATGCTGGTGGTGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTGCAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.393

98.319

0.613