Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   QQS40_RS00055 Genome accession   NZ_CP127167
Coordinates   11285..11953 (-) Length   222 a.a.
NCBI ID   WP_049357048.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6285..16953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS00035 - 6595..7461 (-) 867 WP_289901416.1 MurR/RpiR family transcriptional regulator -
  QQS40_RS00040 - 7454..8392 (-) 939 WP_289901417.1 N-acetylmannosamine kinase -
  QQS40_RS00045 - 8404..9093 (-) 690 WP_070590546.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  QQS40_RS00050 nagE 9309..10775 (+) 1467 WP_289901418.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  QQS40_RS00055 crp 11285..11953 (-) 669 WP_049357048.1 cAMP-activated global transcriptional regulator CRP Regulator
  QQS40_RS00060 - 11970..12188 (-) 219 WP_005695554.1 YheU family protein -
  QQS40_RS00065 slmA 12210..12863 (-) 654 WP_049357050.1 nucleoid occlusion factor SlmA -
  QQS40_RS00070 dut 12867..13322 (-) 456 WP_049357052.1 dUTP diphosphatase -
  QQS40_RS00075 coaBC 13396..14598 (-) 1203 WP_049357053.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  QQS40_RS00080 radC 14800..15465 (+) 666 WP_049357054.1 RadC family protein -
  QQS40_RS00085 rpmB 15683..15919 (+) 237 WP_005599762.1 50S ribosomal protein L28 -
  QQS40_RS00090 rpmG 15931..16101 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25161.93 Da        Isoelectric Point: 6.6938

>NTDB_id=842299 QQS40_RS00055 WP_049357048.1 11285..11953(-) (crp) [Haemophilus parainfluenzae strain HP01]
MSEDVELLEEQKPQDDEQQRDPALDWFLTHCHLHKYPAKSTLIHAGEDANILYFLIKGTVMVSSKDDEGKEMILSYLGAG
QFFGEAGLFDEGSKRSAWVKTKTPCEIAEISYKKYRQLIQINPEILMFLTSQLSKRLQNTSRQVTNLAFLDVAGRIAQAL
MHLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=842299 QQS40_RS00055 WP_049357048.1 11285..11953(-) (crp) [Haemophilus parainfluenzae strain HP01]
ATGTCAGAAGATGTAGAATTACTTGAAGAACAAAAGCCTCAGGATGATGAGCAGCAACGCGATCCTGCGCTTGATTGGTT
CCTAACACATTGCCATTTACATAAATATCCAGCAAAGTCGACTTTAATTCATGCTGGGGAGGATGCCAATATTCTGTATT
TCTTAATTAAAGGAACAGTAATGGTGTCATCAAAAGATGACGAAGGCAAAGAAATGATTTTATCTTATTTGGGGGCTGGG
CAATTTTTTGGTGAAGCAGGTTTATTTGATGAGGGATCGAAACGTTCTGCTTGGGTGAAAACCAAAACGCCTTGTGAAAT
TGCGGAAATTTCCTATAAAAAATATCGTCAGCTTATTCAAATTAATCCTGAGATTTTAATGTTTCTTACTTCTCAGTTAT
CAAAACGCTTGCAAAATACCTCTCGACAAGTGACTAACTTGGCCTTTTTGGATGTGGCAGGGCGTATTGCTCAGGCGCTT
ATGCATCTAGCAAAACAGCCTGAAGCCATGACTCATCCGGATGGTATGCAGATTAAAATCACGCGCCAGGAAATCGGTCA
AATGGTGGGTTGTTCTCGTGAAACCGTAGGGCGAATAATTAAGATGCTGGAAGATCAAAATCTAATTCATGCGCACGGCA
AAACCATTGTGGTTTATGGCACTCGATAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(34-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(154-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

86.161

100

0.869
  crp Vibrio cholerae strain A1552

73.529

91.892

0.676
  crp Acinetobacter baumannii D1279779

46.231

89.64

0.414