Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QQX51_RS23655 | Genome accession | NZ_CP127120 |
| Coordinates | 5088876..5089748 (+) | Length | 290 a.a. |
| NCBI ID | WP_017148550.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain USA_2_BIM | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5083876..5094748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQX51_RS23635 (QQX51_23615) | tfpZ | 5084384..5085121 (-) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
| QQX51_RS23640 (QQX51_23620) | pilE | 5085186..5085722 (-) | 537 | WP_025921208.1 | pilin | Machinery gene |
| QQX51_RS23645 (QQX51_23625) | pilB | 5085949..5087652 (+) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QQX51_RS23650 (QQX51_23630) | pilC | 5087656..5088873 (+) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| QQX51_RS23655 (QQX51_23635) | pilD | 5088876..5089748 (+) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| QQX51_RS23660 (QQX51_23640) | coaE | 5089745..5090356 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| QQX51_RS23665 (QQX51_23645) | yacG | 5090353..5090553 (+) | 201 | WP_017148551.1 | DNA gyrase inhibitor YacG | - |
| QQX51_RS23670 (QQX51_23650) | - | 5090590..5090799 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| QQX51_RS23675 (QQX51_23655) | - | 5090905..5091594 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| QQX51_RS23680 (QQX51_23660) | - | 5091591..5092061 (-) | 471 | WP_023103507.1 | hypothetical protein | - |
| QQX51_RS23685 (QQX51_23665) | - | 5092058..5092483 (-) | 426 | WP_016562341.1 | GNAT family N-acetyltransferase | - |
| QQX51_RS23690 (QQX51_23670) | - | 5092616..5093245 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| QQX51_RS23695 (QQX51_23675) | - | 5093242..5093691 (+) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| QQX51_RS23700 (QQX51_23680) | - | 5093717..5093887 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31888.88 Da Isoelectric Point: 7.7068
>NTDB_id=841886 QQX51_RS23655 WP_017148550.1 5088876..5089748(+) (pilD) [Pseudomonas aeruginosa strain USA_2_BIM]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=841886 QQX51_RS23655 WP_017148550.1 5088876..5089748(+) (pilD) [Pseudomonas aeruginosa strain USA_2_BIM]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
53.791 |
95.517 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.071 |
96.552 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
51.071 |
96.552 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.571 |
96.552 |
0.469 |