Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   QQX51_RS23640 Genome accession   NZ_CP127120
Coordinates   5085186..5085722 (-) Length   178 a.a.
NCBI ID   WP_025921208.1    Uniprot ID   Q8KQ36
Organism   Pseudomonas aeruginosa strain USA_2_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5080186..5090722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX51_RS23620 (QQX51_23600) - 5080761..5083016 (-) 2256 WP_003104913.1 DUF1631 domain-containing protein -
  QQX51_RS23625 (QQX51_23605) nadC 5083302..5084150 (+) 849 WP_017148538.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QQX51_RS23635 (QQX51_23615) tfpZ 5084384..5085121 (-) 738 WP_023110409.1 TfpX/TfpZ family type IV pilin accessory protein -
  QQX51_RS23640 (QQX51_23620) pilE 5085186..5085722 (-) 537 WP_025921208.1 pilin Machinery gene
  QQX51_RS23645 (QQX51_23625) pilB 5085949..5087652 (+) 1704 WP_023100230.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QQX51_RS23650 (QQX51_23630) pilC 5087656..5088873 (+) 1218 WP_023103506.1 type II secretion system F family protein Machinery gene
  QQX51_RS23655 (QQX51_23635) pilD 5088876..5089748 (+) 873 WP_017148550.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  QQX51_RS23660 (QQX51_23640) coaE 5089745..5090356 (+) 612 WP_003094654.1 dephospho-CoA kinase -
  QQX51_RS23665 (QQX51_23645) yacG 5090353..5090553 (+) 201 WP_017148551.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18322.83 Da        Isoelectric Point: 4.9984

>NTDB_id=841883 QQX51_RS23640 WP_025921208.1 5085186..5085722(-) (pilE) [Pseudomonas aeruginosa strain USA_2_BIM]
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRTRVSEGLVLAEPAKLMISTDGSASTADLTRATTTWNQQSNNLGA
SSKYVTSVLMDAGNTGVITITYVADQVGLPTAGNTLILSPYINDGNTRTALATAVAAGTRGTIDWACTSASNATATAQGF
TGMAAGSVPQEFAPAQCR

Nucleotide


Download         Length: 537 bp        

>NTDB_id=841883 QQX51_RS23640 WP_025921208.1 5085186..5085722(-) (pilE) [Pseudomonas aeruginosa strain USA_2_BIM]
ATGAAAGCTCAAAAAGGCTTCACTTTGATCGAGCTGATGATCGTTGTAGCGATCATCGGTATTCTGGCTGCGATTGCTCT
GCCGGCCTATCAGGACTACACCGTTCGTACCCGTGTCAGTGAAGGTCTGGTTCTGGCTGAGCCCGCCAAACTGATGATCT
CCACGGATGGAAGTGCTTCTACTGCTGATCTGACTCGCGCAACCACTACTTGGAACCAGCAATCCAATAATCTGGGTGCA
TCCAGTAAGTACGTAACATCTGTTTTGATGGATGCTGGTAACACCGGTGTTATCACTATTACGTATGTCGCTGACCAAGT
GGGCTTGCCGACTGCCGGTAACACTCTGATTCTGTCTCCCTATATCAATGATGGTAACACTCGCACTGCTCTGGCGACTG
CAGTGGCTGCTGGCACTCGTGGCACCATTGATTGGGCTTGCACTTCGGCATCGAACGCGACTGCCACTGCTCAGGGTTTC
ACCGGCATGGCAGCTGGTAGTGTGCCGCAAGAGTTTGCTCCTGCTCAGTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3JYZ
  PDB 3JZZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

43.719

100

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

40.556

100

0.41
  pilA2 Legionella pneumophila strain ERS1305867

40.341

98.876

0.399
  pilA2 Legionella pneumophila str. Paris

39.773

98.876

0.393