Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QQO14_RS11805 Genome accession   NZ_CP127096
Coordinates   2401849..2402361 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain M1691_10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2396849..2407361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO14_RS11770 - 2397053..2397682 (-) 630 WP_285490514.1 LysE family translocator -
  QQO14_RS11775 - 2398139..2398372 (+) 234 WP_037537782.1 hypothetical protein -
  QQO14_RS11780 - 2398429..2398677 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QQO14_RS11785 - 2398855..2399604 (-) 750 WP_285490516.1 amidohydrolase family protein -
  QQO14_RS11790 - 2399820..2400077 (+) 258 WP_011276864.1 hypothetical protein -
  QQO14_RS11795 - 2400281..2401351 (+) 1071 WP_053019589.1 Ltp family lipoprotein -
  QQO14_RS11800 rpsR 2401559..2401801 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  QQO14_RS11805 ssbA 2401849..2402361 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  QQO14_RS11810 rpsF 2402383..2402679 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  QQO14_RS11815 - 2402970..2403776 (+) 807 WP_037537778.1 glycoside hydrolase family 25 protein -
  QQO14_RS11820 - 2403842..2404033 (+) 192 WP_011276869.1 hypothetical protein -
  QQO14_RS11825 ychF 2404177..2405274 (-) 1098 WP_037537775.1 redox-regulated ATPase YchF -
  QQO14_RS11830 - 2405286..2405489 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  QQO14_RS11835 - 2405511..2406392 (-) 882 WP_011276872.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=841756 QQO14_RS11805 WP_011276866.1 2401849..2402361(-) (ssbA) [Staphylococcus haemolyticus strain M1691_10]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=841756 QQO14_RS11805 WP_011276866.1 2401849..2402361(-) (ssbA) [Staphylococcus haemolyticus strain M1691_10]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACGTCTTACAATAACAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376