Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QQO14_RS08145 Genome accession   NZ_CP127096
Coordinates   1644033..1644899 (-) Length   288 a.a.
NCBI ID   WP_285490016.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain M1691_10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1631148..1679709 1644033..1644899 within 0


Gene organization within MGE regions


Location: 1631148..1679709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO14_RS08085 - 1631274..1632056 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  QQO14_RS08090 - 1632060..1632830 (-) 771 WP_285490005.1 isoprenyl transferase -
  QQO14_RS08095 frr 1633056..1633610 (-) 555 WP_011275941.1 ribosome recycling factor -
  QQO14_RS08100 pyrH 1633628..1634350 (-) 723 WP_011275942.1 UMP kinase -
  QQO14_RS08105 tsf 1634487..1635365 (-) 879 WP_285490008.1 translation elongation factor Ts -
  QQO14_RS08110 rpsB 1635530..1636318 (-) 789 WP_037537322.1 30S ribosomal protein S2 -
  QQO14_RS08115 codY 1636585..1637358 (-) 774 WP_285490010.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QQO14_RS08120 hslU 1637380..1638783 (-) 1404 WP_037537323.1 ATP-dependent protease ATPase subunit HslU -
  QQO14_RS08125 hslV 1638843..1639388 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  QQO14_RS08130 xerC 1639389..1640282 (-) 894 WP_285490012.1 tyrosine recombinase XerC -
  QQO14_RS08135 trmFO 1640454..1641761 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QQO14_RS08140 topA 1641785..1643854 (-) 2070 WP_285490014.1 type I DNA topoisomerase -
  QQO14_RS08145 dprA 1644033..1644899 (-) 867 WP_285490016.1 DNA-processing protein DprA Machinery gene
  QQO14_RS08150 - 1645118..1646347 (-) 1230 WP_285491740.1 aminoacyltransferase -
  QQO14_RS08155 - 1646378..1646631 (-) 254 Protein_1571 cell wall hydrolase -
  QQO14_RS08165 sucD 1647075..1647980 (-) 906 WP_011275953.1 succinate--CoA ligase subunit alpha -
  QQO14_RS08170 sucC 1648002..1649168 (-) 1167 WP_053017080.1 ADP-forming succinate--CoA ligase subunit beta -
  QQO14_RS08175 - 1649280..1650047 (-) 768 WP_285490018.1 ribonuclease HII -
  QQO14_RS08180 ylqF 1650031..1650915 (-) 885 WP_285490020.1 ribosome biogenesis GTPase YlqF -
  QQO14_RS08185 - 1651152..1653746 (+) 2595 WP_285490022.1 YfhO family protein -
  QQO14_RS08190 - 1653748..1656357 (+) 2610 WP_285490023.1 YfhO family protein -
  QQO14_RS08195 rplS 1656514..1656864 (-) 351 WP_285490025.1 50S ribosomal protein L19 -
  QQO14_RS08200 trmD 1656969..1657706 (-) 738 WP_037537865.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QQO14_RS08205 rimM 1657706..1658209 (-) 504 WP_285490027.1 ribosome maturation factor RimM -
  QQO14_RS08210 rpsP 1658328..1658603 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  QQO14_RS08215 ffh 1659338..1660708 (-) 1371 WP_037557994.1 signal recognition particle protein -
  QQO14_RS08220 - 1660734..1661066 (-) 333 WP_037537868.1 putative DNA-binding protein -
  QQO14_RS08225 ftsY 1661053..1662276 (-) 1224 WP_037557992.1 signal recognition particle-docking protein FtsY -
  QQO14_RS08230 smc 1662273..1665842 (-) 3570 WP_285490029.1 chromosome segregation protein SMC -
  QQO14_RS08235 rnc 1665927..1666664 (-) 738 WP_011275967.1 ribonuclease III -
  QQO14_RS08240 - 1666750..1666983 (-) 234 WP_001830184.1 acyl carrier protein -
  QQO14_RS08245 fabG 1667096..1667833 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QQO14_RS08250 fabD 1667823..1668752 (-) 930 WP_285490031.1 ACP S-malonyltransferase -
  QQO14_RS08255 plsX 1668745..1669731 (-) 987 WP_037537880.1 phosphate acyltransferase PlsX -
  QQO14_RS08260 fapR 1669733..1670293 (-) 561 WP_011275971.1 transcription factor FapR -
  QQO14_RS08265 recG 1670429..1672480 (-) 2052 WP_285490033.1 ATP-dependent DNA helicase RecG -
  QQO14_RS08270 - 1672635..1673438 (-) 804 WP_285490035.1 thermonuclease family protein -
  QQO14_RS08275 fakA 1673623..1675281 (-) 1659 WP_070440716.1 fatty acid kinase catalytic subunit FakA -
  QQO14_RS08280 - 1675302..1675670 (-) 369 WP_011275975.1 Asp23/Gls24 family envelope stress response protein -
  QQO14_RS08285 rpmB 1675952..1676140 (+) 189 WP_011275976.1 50S ribosomal protein L28 -
  QQO14_RS08290 - 1676202..1676843 (-) 642 WP_285490037.1 thiamine diphosphokinase -
  QQO14_RS08295 rpe 1676851..1677495 (-) 645 WP_240563464.1 ribulose-phosphate 3-epimerase -
  QQO14_RS08300 rsgA 1677495..1678370 (-) 876 WP_285490039.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33098.92 Da        Isoelectric Point: 7.9530

>NTDB_id=841750 QQO14_RS08145 WP_285490016.1 1644033..1644899(-) (dprA) [Staphylococcus haemolyticus strain M1691_10]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFEFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLTSSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHYF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPFTSVRRYHFPQSNRLISGLSQGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=841750 QQO14_RS08145 WP_285490016.1 1644033..1644899(-) (dprA) [Staphylococcus haemolyticus strain M1691_10]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGTTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTGAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCG
TTTATTAACATCCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATTGCACATTATTTT
GCTATAGAGTATCAATTACCTACTATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCATTCACTAGTGTTAGGCGATATCACTTTCCGC
AAAGCAATCGTTTGATAAGCGGTCTTTCACAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACTAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.228

98.958

0.507
  dprA Staphylococcus aureus N315

51.228

98.958

0.507
  dprA Glaesserella parasuis strain SC1401

36.749

98.264

0.361